Cluster: HRGMv2_1901_CGC43
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1901
- CGC Family ID: CGCFAM_02889
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1901_23 | HRGMv2_1901_23_7 | 4886 | 5905 | + | 9.A.23.1.1 |
| pfam | HRGMv2_1901_23 | HRGMv2_1901_23_8 | 5973 | 7427 | + | Mur_ligase | Mur_ligase_C | Mur_ligase_M |
| CAZyme | HRGMv2_1901_23 | HRGMv2_1901_23_9 | 7472 | 8866 | + | CE4 |
| NULL(UNKNOWN) | HRGMv2_1901_23 | HRGMv2_1901_23_10 | 9217 | 9351 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_1901_23 | HRGMv2_1901_23_11 | 9338 | 10639 | + | Big_3 | LRR_5 | LRR_5 |
| TC | HRGMv2_1901_23 | HRGMv2_1901_23_12 | 10760 | 12361 | + | 3.A.1.121.4 |
Gene ID: HRGMv2_1901_23_7
Type: TC
Location: 4886 - 5905 (+)
Type: TC
Location: 4886 - 5905 (+)
Gene ID: HRGMv2_1901_23_8
Type: pfam
Location: 5973 - 7427 (+)
Type: pfam
Location: 5973 - 7427 (+)
Gene ID: HRGMv2_1901_23_9
Type: CAZyme
Location: 7472 - 8866 (+)
Type: CAZyme
Location: 7472 - 8866 (+)
Gene ID: HRGMv2_1901_23_10
Type:
Location: 9217 - 9351 (+)
Type:
Location: 9217 - 9351 (+)
Gene ID: HRGMv2_1901_23_11
Type: pfam
Location: 9338 - 10639 (+)
Type: pfam
Location: 9338 - 10639 (+)
Gene ID: HRGMv2_1901_23_12
Type: TC
Location: 10760 - 12361 (+)
Type: TC
Location: 10760 - 12361 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Coprobacillaceae
Genus
Coprobacillus
Species
Coprobacillus cateniformis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.