Cluster: HRGMv2_1901_CGC42
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_1901
- CGC Family ID: CGCFAM_02353
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1901_21 | HRGMv2_1901_21_22 | 23506 | 24990 | - | GH1 |
| TC | HRGMv2_1901_21 | HRGMv2_1901_21_23 | 25003 | 26307 | - | 4.A.3.2.7 |
| TF | HRGMv2_1901_21 | HRGMv2_1901_21_24 | 26584 | 27345 | - | HTH_6 |
| CAZyme | HRGMv2_1901_21 | HRGMv2_1901_21_25 | 27387 | 30032 | - | GH38 |
| TC | HRGMv2_1901_21 | HRGMv2_1901_21_26 | 30025 | 31365 | - | 4.A.3.2.8 |
| CAZyme | HRGMv2_1901_21 | HRGMv2_1901_21_27 | 31441 | 32709 | - | GH125 |
Gene ID: HRGMv2_1901_21_22
Type: CAZyme
Location: 23506 - 24990 (-)
Type: CAZyme
Location: 23506 - 24990 (-)
Gene ID: HRGMv2_1901_21_23
Type: TC
Location: 25003 - 26307 (-)
Type: TC
Location: 25003 - 26307 (-)
Gene ID: HRGMv2_1901_21_24
Type: TF
Location: 26584 - 27345 (-)
Type: TF
Location: 26584 - 27345 (-)
Gene ID: HRGMv2_1901_21_25
Type: CAZyme
Location: 27387 - 30032 (-)
Type: CAZyme
Location: 27387 - 30032 (-)
Gene ID: HRGMv2_1901_21_26
Type: TC
Location: 30025 - 31365 (-)
Type: TC
Location: 30025 - 31365 (-)
Gene ID: HRGMv2_1901_21_27
Type: CAZyme
Location: 31441 - 32709 (-)
Type: CAZyme
Location: 31441 - 32709 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Coprobacillaceae
Genus
Coprobacillus
Species
Coprobacillus cateniformis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.