Cluster: HRGMv2_1901_CGC41
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1901
- CGC Family ID: CGCFAM_02888
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1901_20 | HRGMv2_1901_20_28 | 24532 | 25683 | - | GH170 |
| TC | HRGMv2_1901_20 | HRGMv2_1901_20_29 | 25807 | 27507 | + | 9.B.146.1.2 |
| TC | HRGMv2_1901_20 | HRGMv2_1901_20_30 | 27684 | 28865 | + | 2.A.36.2.1 |
Gene ID: HRGMv2_1901_20_28
Type: CAZyme
Location: 24532 - 25683 (-)
Type: CAZyme
Location: 24532 - 25683 (-)
Gene ID: HRGMv2_1901_20_29
Type: TC
Location: 25807 - 27507 (+)
Type: TC
Location: 25807 - 27507 (+)
Gene ID: HRGMv2_1901_20_30
Type: TC
Location: 27684 - 28865 (+)
Type: TC
Location: 27684 - 28865 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Coprobacillaceae
Genus
Coprobacillus
Species
Coprobacillus cateniformis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1901_20_28 | vegan > omnivore | 4.43151 | 0.00574 |
| HRGMv2_1901_20_28 | vegetarian > omnivore | 3.45948 | 0.03132 |