Cluster: HRGMv2_1901_CGC40
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1901
- CGC Family ID: CGCFAM_02607
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1901_20 | HRGMv2_1901_20_4 | 2522 | 4372 | + | 4.A.2.1.4 |
| pfam | HRGMv2_1901_20 | HRGMv2_1901_20_5 | 4528 | 5484 | + | Ldh_1_N | Ldh_1_C |
| peptidase | HRGMv2_1901_20 | HRGMv2_1901_20_6 | 5497 | 6720 | - | C40.UPW |
| CAZyme | HRGMv2_1901_20 | HRGMv2_1901_20_7 | 6958 | 7980 | + | GH25 |
| TC | HRGMv2_1901_20 | HRGMv2_1901_20_8 | 8136 | 9017 | + | 2.A.115.1.1 |
Gene ID: HRGMv2_1901_20_4
Type: TC
Location: 2522 - 4372 (+)
Type: TC
Location: 2522 - 4372 (+)
Gene ID: HRGMv2_1901_20_5
Type: pfam
Location: 4528 - 5484 (+)
Type: pfam
Location: 4528 - 5484 (+)
Gene ID: HRGMv2_1901_20_6
Type: peptidase
Location: 5497 - 6720 (-)
Type: peptidase
Location: 5497 - 6720 (-)
Gene ID: HRGMv2_1901_20_7
Type: CAZyme
Location: 6958 - 7980 (+)
Type: CAZyme
Location: 6958 - 7980 (+)
Gene ID: HRGMv2_1901_20_8
Type: TC
Location: 8136 - 9017 (+)
Type: TC
Location: 8136 - 9017 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Coprobacillaceae
Genus
Coprobacillus
Species
Coprobacillus cateniformis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.