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Cluster: HRGMv2_1901_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1901_2 HRGMv2_1901_2_166 166405 167481 - GH170
STP HRGMv2_1901_2 HRGMv2_1901_2_167 167500 168171 - PIG-L
pfam HRGMv2_1901_2 HRGMv2_1901_2_168 168161 169114 - Acetyltransf_1 | Acetyltransf_1 | Acetyltransf_7
TC HRGMv2_1901_2 HRGMv2_1901_2_169 169130 170479 - 4.A.3.2.8
TF HRGMv2_1901_2 HRGMv2_1901_2_170 170708 171490 + HTH_6
STP HRGMv2_1901_2 HRGMv2_1901_2_171 171594 171905 - HATPase_c
CAZyme HRGMv2_1901_2 HRGMv2_1901_2_172 172053 173453 - GH4
Gene ID: HRGMv2_1901_2_166
Type: CAZyme
Location: 166405 - 167481 (-)
Gene ID: HRGMv2_1901_2_167
Type: STP
Location: 167500 - 168171 (-)
Gene ID: HRGMv2_1901_2_168
Type: pfam
Location: 168161 - 169114 (-)
Gene ID: HRGMv2_1901_2_169
Type: TC
Location: 169130 - 170479 (-)
Gene ID: HRGMv2_1901_2_170
Type: TF
Location: 170708 - 171490 (+)
Gene ID: HRGMv2_1901_2_171
Type: STP
Location: 171594 - 171905 (-)
Gene ID: HRGMv2_1901_2_172
Type: CAZyme
Location: 172053 - 173453 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1901_2_172 vegan > omnivore 1.09387 0.00574

🧭 Explore Read Mapping of CGC

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