Cluster: HRGMv2_1901_CGC39
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1901
- CGC Family ID: CGCFAM_09892
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1901_18 | HRGMv2_1901_18_57 | 53168 | 54607 | + | GH13_5 |
| NULL(UNKNOWN) | HRGMv2_1901_18 | HRGMv2_1901_18_58 | 55040 | 55288 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | HRGMv2_1901_18 | HRGMv2_1901_18_59 | 55464 | 55835 | + | GntR |
| TC | HRGMv2_1901_18 | HRGMv2_1901_18_60 | 55839 | 56687 | + | 3.A.1.149.1 |
| pfam | HRGMv2_1901_18 | HRGMv2_1901_18_61 | 56687 | 57343 | + | ABC2_membrane_5 |
| pfam | HRGMv2_1901_18 | HRGMv2_1901_18_62 | 57512 | 57928 | + | DUF2992 |
| TC | HRGMv2_1901_18 | HRGMv2_1901_18_63 | 58090 | 59643 | + | 3.A.1.121.4 |
Gene ID: HRGMv2_1901_18_57
Type: CAZyme
Location: 53168 - 54607 (+)
Type: CAZyme
Location: 53168 - 54607 (+)
Gene ID: HRGMv2_1901_18_58
Type:
Location: 55040 - 55288 (-)
Type:
Location: 55040 - 55288 (-)
Gene ID: HRGMv2_1901_18_59
Type: TF
Location: 55464 - 55835 (+)
Type: TF
Location: 55464 - 55835 (+)
Gene ID: HRGMv2_1901_18_60
Type: TC
Location: 55839 - 56687 (+)
Type: TC
Location: 55839 - 56687 (+)
Gene ID: HRGMv2_1901_18_61
Type: pfam
Location: 56687 - 57343 (+)
Type: pfam
Location: 56687 - 57343 (+)
Gene ID: HRGMv2_1901_18_62
Type: pfam
Location: 57512 - 57928 (+)
Type: pfam
Location: 57512 - 57928 (+)
Gene ID: HRGMv2_1901_18_63
Type: TC
Location: 58090 - 59643 (+)
Type: TC
Location: 58090 - 59643 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Coprobacillaceae
Genus
Coprobacillus
Species
Coprobacillus cateniformis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.