Cluster: HRGMv2_1901_CGC37
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate: beta-glucan
- Genome ID: HRGMv2_1901
- CGC Family ID: CGCFAM_00042
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1901_17 | HRGMv2_1901_17_19 | 17420 | 18700 | + | 4.A.3.2.6 |
| CAZyme | HRGMv2_1901_17 | HRGMv2_1901_17_20 | 18681 | 20108 | + | GH1 |
| NULL(UNKNOWN) | HRGMv2_1901_17 | HRGMv2_1901_17_21 | 20118 | 20714 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| peptidase | HRGMv2_1901_17 | HRGMv2_1901_17_22 | 20787 | 22187 | + | M17.UPW |
| TC | HRGMv2_1901_17 | HRGMv2_1901_17_23 | 22310 | 23197 | + | 8.A.59.4.1 |
Gene ID: HRGMv2_1901_17_19
Type: TC
Location: 17420 - 18700 (+)
Type: TC
Location: 17420 - 18700 (+)
Gene ID: HRGMv2_1901_17_20
Type: CAZyme
Location: 18681 - 20108 (+)
Type: CAZyme
Location: 18681 - 20108 (+)
Gene ID: HRGMv2_1901_17_21
Type:
Location: 20118 - 20714 (+)
Type:
Location: 20118 - 20714 (+)
Gene ID: HRGMv2_1901_17_22
Type: peptidase
Location: 20787 - 22187 (+)
Type: peptidase
Location: 20787 - 22187 (+)
Gene ID: HRGMv2_1901_17_23
Type: TC
Location: 22310 - 23197 (+)
Type: TC
Location: 22310 - 23197 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Coprobacillaceae
Genus
Coprobacillus
Species
Coprobacillus cateniformis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.