Cluster: HRGMv2_1901_CGC36
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1901
- CGC Family ID: CGCFAM_00029
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1901_16 | HRGMv2_1901_16_1 | 121 | 2004 | + | 9.B.18.2.1 |
| pfam | HRGMv2_1901_16 | HRGMv2_1901_16_2 | 2253 | 2765 | + | NusG |
| pfam | HRGMv2_1901_16 | HRGMv2_1901_16_3 | 2798 | 4015 | + | Aminotran_1_2 | DegT_DnrJ_EryC1 |
| TC | HRGMv2_1901_16 | HRGMv2_1901_16_4 | 4006 | 4692 | + | 9.B.18.1.3 |
| CAZyme | HRGMv2_1901_16 | HRGMv2_1901_16_5 | 4671 | 5828 | + | GT4 |
Gene ID: HRGMv2_1901_16_1
Type: TC
Location: 121 - 2004 (+)
Type: TC
Location: 121 - 2004 (+)
Gene ID: HRGMv2_1901_16_2
Type: pfam
Location: 2253 - 2765 (+)
Type: pfam
Location: 2253 - 2765 (+)
Gene ID: HRGMv2_1901_16_3
Type: pfam
Location: 2798 - 4015 (+)
Type: pfam
Location: 2798 - 4015 (+)
Gene ID: HRGMv2_1901_16_4
Type: TC
Location: 4006 - 4692 (+)
Type: TC
Location: 4006 - 4692 (+)
Gene ID: HRGMv2_1901_16_5
Type: CAZyme
Location: 4671 - 5828 (+)
Type: CAZyme
Location: 4671 - 5828 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Coprobacillaceae
Genus
Coprobacillus
Species
Coprobacillus cateniformis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.