Cluster: HRGMv2_1901_CGC30
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1901
- CGC Family ID: CGCFAM_00027
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1901_13 | HRGMv2_1901_13_29 | 23692 | 24369 | + | 3.A.1.125.1 |
| TF | HRGMv2_1901_13 | HRGMv2_1901_13_30 | 24546 | 25556 | - | HTH_AraC | HTH_AraC |
| CAZyme | HRGMv2_1901_13 | HRGMv2_1901_13_31 | 25675 | 27141 | + | GH1 |
| TC | HRGMv2_1901_13 | HRGMv2_1901_13_32 | 27146 | 28936 | + | 4.A.1.2.11 |
Gene ID: HRGMv2_1901_13_29
Type: TC
Location: 23692 - 24369 (+)
Type: TC
Location: 23692 - 24369 (+)
Gene ID: HRGMv2_1901_13_30
Type: TF
Location: 24546 - 25556 (-)
Type: TF
Location: 24546 - 25556 (-)
Gene ID: HRGMv2_1901_13_31
Type: CAZyme
Location: 25675 - 27141 (+)
Type: CAZyme
Location: 25675 - 27141 (+)
Gene ID: HRGMv2_1901_13_32
Type: TC
Location: 27146 - 28936 (+)
Type: TC
Location: 27146 - 28936 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Coprobacillaceae
Genus
Coprobacillus
Species
Coprobacillus cateniformis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.