Cluster: HRGMv2_1901_CGC29
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1901
- CGC Family ID: CGCFAM_00205
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1901_13 | HRGMv2_1901_13_2 | 640 | 1086 | + | 4.A.2.1.21 |
| TC | HRGMv2_1901_13 | HRGMv2_1901_13_3 | 1089 | 1406 | + | 4.A.2.1.10 |
| TC | HRGMv2_1901_13 | HRGMv2_1901_13_4 | 1503 | 2603 | + | 4.A.2.1.4 |
| CAZyme | HRGMv2_1901_13 | HRGMv2_1901_13_5 | 2653 | 5376 | + | GH38 |
Gene ID: HRGMv2_1901_13_2
Type: TC
Location: 640 - 1086 (+)
Type: TC
Location: 640 - 1086 (+)
Gene ID: HRGMv2_1901_13_3
Type: TC
Location: 1089 - 1406 (+)
Type: TC
Location: 1089 - 1406 (+)
Gene ID: HRGMv2_1901_13_4
Type: TC
Location: 1503 - 2603 (+)
Type: TC
Location: 1503 - 2603 (+)
Gene ID: HRGMv2_1901_13_5
Type: CAZyme
Location: 2653 - 5376 (+)
Type: CAZyme
Location: 2653 - 5376 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Coprobacillaceae
Genus
Coprobacillus
Species
Coprobacillus cateniformis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.