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Cluster: HRGMv2_1901_CGC23

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1901_9 HRGMv2_1901_9_36 38286 39557 + 4.A.3.2.8
CAZyme HRGMv2_1901_9 HRGMv2_1901_9_37 39589 42123 + GH106
CAZyme HRGMv2_1901_9 HRGMv2_1901_9_38 42123 43547 + GH1
TC HRGMv2_1901_9 HRGMv2_1901_9_39 43703 44185 + 4.A.1.1.14
pfam HRGMv2_1901_9 HRGMv2_1901_9_40 44209 45042 + PRD | PRD | CAT_RBD
TC HRGMv2_1901_9 HRGMv2_1901_9_41 45173 46561 + 4.A.1.2.11
CAZyme HRGMv2_1901_9 HRGMv2_1901_9_42 46555 47955 + GH1
CAZyme HRGMv2_1901_9 HRGMv2_1901_9_43 47990 49477 + CE20
Gene ID: HRGMv2_1901_9_36
Type: TC
Location: 38286 - 39557 (+)
Gene ID: HRGMv2_1901_9_37
Type: CAZyme
Location: 39589 - 42123 (+)
Gene ID: HRGMv2_1901_9_38
Type: CAZyme
Location: 42123 - 43547 (+)
Gene ID: HRGMv2_1901_9_39
Type: TC
Location: 43703 - 44185 (+)
Gene ID: HRGMv2_1901_9_40
Type: pfam
Location: 44209 - 45042 (+)
Gene ID: HRGMv2_1901_9_41
Type: TC
Location: 45173 - 46561 (+)
Gene ID: HRGMv2_1901_9_42
Type: CAZyme
Location: 46555 - 47955 (+)
Gene ID: HRGMv2_1901_9_43
Type: CAZyme
Location: 47990 - 49477 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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