dbCAN Logo

Cluster: HRGMv2_1901_CGC22

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1901_9 HRGMv2_1901_9_20 19048 19749 + 9.B.143.2.3
NULL(UNKNOWN) HRGMv2_1901_9 HRGMv2_1901_9_21 19764 20120 - NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_1901_9 HRGMv2_1901_9_22 20161 20793 + DUF421
TC HRGMv2_1901_9 HRGMv2_1901_9_23 20856 21650 - 3.A.1.34.1
TC HRGMv2_1901_9 HRGMv2_1901_9_24 21643 22569 - 3.A.1.34.1
TC HRGMv2_1901_9 HRGMv2_1901_9_25 22579 23562 - 3.A.1.34.1
TC HRGMv2_1901_9 HRGMv2_1901_9_26 23986 24774 - 2.A.5.5.2
TC HRGMv2_1901_9 HRGMv2_1901_9_27 24817 26415 - 2.A.36.6.4
NULL(UNKNOWN) HRGMv2_1901_9 HRGMv2_1901_9_28 26498 27745 - NULL(UNKNOWN)
[View Structural Homologs]
TF HRGMv2_1901_9 HRGMv2_1901_9_29 27840 28826 - HTH_AraC | HTH_AraC
TC HRGMv2_1901_9 HRGMv2_1901_9_30 29009 30337 + 4.A.3.2.2
CAZyme HRGMv2_1901_9 HRGMv2_1901_9_31 30372 32618 + GH78
Gene ID: HRGMv2_1901_9_20
Type: TC
Location: 19048 - 19749 (+)
Gene ID: HRGMv2_1901_9_21
Type:
Location: 19764 - 20120 (-)
Gene ID: HRGMv2_1901_9_22
Type: pfam
Location: 20161 - 20793 (+)
Gene ID: HRGMv2_1901_9_23
Type: TC
Location: 20856 - 21650 (-)
Gene ID: HRGMv2_1901_9_24
Type: TC
Location: 21643 - 22569 (-)
Gene ID: HRGMv2_1901_9_25
Type: TC
Location: 22579 - 23562 (-)
Gene ID: HRGMv2_1901_9_26
Type: TC
Location: 23986 - 24774 (-)
Gene ID: HRGMv2_1901_9_27
Type: TC
Location: 24817 - 26415 (-)
Gene ID: HRGMv2_1901_9_28
Type:
Location: 26498 - 27745 (-)
Gene ID: HRGMv2_1901_9_29
Type: TF
Location: 27840 - 28826 (-)
Gene ID: HRGMv2_1901_9_30
Type: TC
Location: 29009 - 30337 (+)
Gene ID: HRGMv2_1901_9_31
Type: CAZyme
Location: 30372 - 32618 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List