Cluster: HRGMv2_1901_CGC21
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_1901
- CGC Family ID: CGCFAM_08015
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1901_8 | HRGMv2_1901_8_84 | 88329 | 89783 | - | GH1 |
| TC | HRGMv2_1901_8 | HRGMv2_1901_8_85 | 89800 | 90099 | - | 4.A.3.2.8 |
| pfam | HRGMv2_1901_8 | HRGMv2_1901_8_86 | 90113 | 90763 | - | Ribul_P_3_epim |
| CAZyme | HRGMv2_1901_8 | HRGMv2_1901_8_87 | 90820 | 92238 | - | GH1 |
| TF | HRGMv2_1901_8 | HRGMv2_1901_8_88 | 92452 | 93477 | + | LacI |
| pfam | HRGMv2_1901_8 | HRGMv2_1901_8_89 | 93522 | 94205 | - | DeoC |
| CAZyme | HRGMv2_1901_8 | HRGMv2_1901_8_90 | 94378 | 95796 | - | GH1 |
Gene ID: HRGMv2_1901_8_84
Type: CAZyme
Location: 88329 - 89783 (-)
Type: CAZyme
Location: 88329 - 89783 (-)
Gene ID: HRGMv2_1901_8_85
Type: TC
Location: 89800 - 90099 (-)
Type: TC
Location: 89800 - 90099 (-)
Gene ID: HRGMv2_1901_8_86
Type: pfam
Location: 90113 - 90763 (-)
Type: pfam
Location: 90113 - 90763 (-)
Gene ID: HRGMv2_1901_8_87
Type: CAZyme
Location: 90820 - 92238 (-)
Type: CAZyme
Location: 90820 - 92238 (-)
Gene ID: HRGMv2_1901_8_88
Type: TF
Location: 92452 - 93477 (+)
Type: TF
Location: 92452 - 93477 (+)
Gene ID: HRGMv2_1901_8_89
Type: pfam
Location: 93522 - 94205 (-)
Type: pfam
Location: 93522 - 94205 (-)
Gene ID: HRGMv2_1901_8_90
Type: CAZyme
Location: 94378 - 95796 (-)
Type: CAZyme
Location: 94378 - 95796 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Coprobacillaceae
Genus
Coprobacillus
Species
Coprobacillus cateniformis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.