Cluster: HRGMv2_1901_CGC20
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate: host glycan/beta-glucan
- Genome ID: HRGMv2_1901
- CGC Family ID: CGCFAM_00020
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1901_8 | HRGMv2_1901_8_73 | 78552 | 79892 | - | 4.A.1.2.11 |
| pfam | HRGMv2_1901_8 | HRGMv2_1901_8_74 | 80019 | 80846 | - | PRD | PRD | CAT_RBD |
| TC | HRGMv2_1901_8 | HRGMv2_1901_8_75 | 80843 | 81397 | - | 4.A.1.1.11 |
| TF | HRGMv2_1901_8 | HRGMv2_1901_8_76 | 81749 | 82534 | + | HTH_6 |
| STP | HRGMv2_1901_8 | HRGMv2_1901_8_77 | 82843 | 83352 | - | Glyoxalase |
| CAZyme | HRGMv2_1901_8 | HRGMv2_1901_8_78 | 83342 | 84706 | - | GH1 |
Gene ID: HRGMv2_1901_8_73
Type: TC
Location: 78552 - 79892 (-)
Type: TC
Location: 78552 - 79892 (-)
Gene ID: HRGMv2_1901_8_74
Type: pfam
Location: 80019 - 80846 (-)
Type: pfam
Location: 80019 - 80846 (-)
Gene ID: HRGMv2_1901_8_75
Type: TC
Location: 80843 - 81397 (-)
Type: TC
Location: 80843 - 81397 (-)
Gene ID: HRGMv2_1901_8_76
Type: TF
Location: 81749 - 82534 (+)
Type: TF
Location: 81749 - 82534 (+)
Gene ID: HRGMv2_1901_8_77
Type: STP
Location: 82843 - 83352 (-)
Type: STP
Location: 82843 - 83352 (-)
Gene ID: HRGMv2_1901_8_78
Type: CAZyme
Location: 83342 - 84706 (-)
Type: CAZyme
Location: 83342 - 84706 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Coprobacillaceae
Genus
Coprobacillus
Species
Coprobacillus cateniformis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1901_8_77 | vegan > omnivore | 5.19899 | 0.00574 |