Cluster: HRGMv2_1901_CGC2
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1901
- CGC Family ID: CGCFAM_09890
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1901_2 | HRGMv2_1901_2_109 | 103126 | 104481 | - | 4.A.5.1.1 |
| TC | HRGMv2_1901_2 | HRGMv2_1901_2_110 | 104504 | 104779 | - | 4.A.5.1.1 |
| TC | HRGMv2_1901_2 | HRGMv2_1901_2_111 | 104776 | 105243 | - | 4.A.5.1.7 |
| TF | HRGMv2_1901_2 | HRGMv2_1901_2_112 | 105415 | 107487 | - | HTH_DeoR | Mga |
| CAZyme | HRGMv2_1901_2 | HRGMv2_1901_2_113 | 107826 | 109259 | - | GH1 |
| NULL(UNKNOWN) | HRGMv2_1901_2 | HRGMv2_1901_2_114 | 109458 | 111833 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_1901_2 | HRGMv2_1901_2_115 | 111817 | 112548 | - | 3.A.1.148.3 |
Gene ID: HRGMv2_1901_2_109
Type: TC
Location: 103126 - 104481 (-)
Type: TC
Location: 103126 - 104481 (-)
Gene ID: HRGMv2_1901_2_110
Type: TC
Location: 104504 - 104779 (-)
Type: TC
Location: 104504 - 104779 (-)
Gene ID: HRGMv2_1901_2_111
Type: TC
Location: 104776 - 105243 (-)
Type: TC
Location: 104776 - 105243 (-)
Gene ID: HRGMv2_1901_2_112
Type: TF
Location: 105415 - 107487 (-)
Type: TF
Location: 105415 - 107487 (-)
Gene ID: HRGMv2_1901_2_113
Type: CAZyme
Location: 107826 - 109259 (-)
Type: CAZyme
Location: 107826 - 109259 (-)
Gene ID: HRGMv2_1901_2_114
Type:
Location: 109458 - 111833 (-)
Type:
Location: 109458 - 111833 (-)
Gene ID: HRGMv2_1901_2_115
Type: TC
Location: 111817 - 112548 (-)
Type: TC
Location: 111817 - 112548 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Coprobacillaceae
Genus
Coprobacillus
Species
Coprobacillus cateniformis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.