Cluster: HRGMv2_1901_CGC18
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_1901
- CGC Family ID: CGCFAM_00851
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1901_8 | HRGMv2_1901_8_9 | 9839 | 12451 | - | GT2 |
| pfam | HRGMv2_1901_8 | HRGMv2_1901_8_10 | 12516 | 12905 | - | CTP_transf_like |
| TC | HRGMv2_1901_8 | HRGMv2_1901_8_11 | 12923 | 13735 | - | 3.A.1.104.2 |
| TC | HRGMv2_1901_8 | HRGMv2_1901_8_12 | 13746 | 14552 | - | 3.A.1.104.1 |
| pfam | HRGMv2_1901_8 | HRGMv2_1901_8_13 | 14629 | 14976 | - | EamA |
| pfam | HRGMv2_1901_8 | HRGMv2_1901_8_14 | 14973 | 15335 | - | DUF2304 |
| CAZyme | HRGMv2_1901_8 | HRGMv2_1901_8_15 | 15339 | 16043 | - | GT2 |
Gene ID: HRGMv2_1901_8_9
Type: CAZyme
Location: 9839 - 12451 (-)
Type: CAZyme
Location: 9839 - 12451 (-)
Gene ID: HRGMv2_1901_8_10
Type: pfam
Location: 12516 - 12905 (-)
Type: pfam
Location: 12516 - 12905 (-)
Gene ID: HRGMv2_1901_8_11
Type: TC
Location: 12923 - 13735 (-)
Type: TC
Location: 12923 - 13735 (-)
Gene ID: HRGMv2_1901_8_12
Type: TC
Location: 13746 - 14552 (-)
Type: TC
Location: 13746 - 14552 (-)
Gene ID: HRGMv2_1901_8_13
Type: pfam
Location: 14629 - 14976 (-)
Type: pfam
Location: 14629 - 14976 (-)
Gene ID: HRGMv2_1901_8_14
Type: pfam
Location: 14973 - 15335 (-)
Type: pfam
Location: 14973 - 15335 (-)
Gene ID: HRGMv2_1901_8_15
Type: CAZyme
Location: 15339 - 16043 (-)
Type: CAZyme
Location: 15339 - 16043 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Coprobacillaceae
Genus
Coprobacillus
Species
Coprobacillus cateniformis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.