Cluster: HRGMv2_1901_CGC13
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1901
- CGC Family ID: CGCFAM_01864
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1901_6 | HRGMv2_1901_6_104 | 103291 | 104736 | - | GH77 |
| pfam | HRGMv2_1901_6 | HRGMv2_1901_6_105 | 104745 | 105386 | - | LUD_dom |
| NULL(UNKNOWN) | HRGMv2_1901_6 | HRGMv2_1901_6_106 | 105334 | 105513 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_1901_6 | HRGMv2_1901_6_107 | 105510 | 107519 | - | 9.A.8.1.6 |
| TC | HRGMv2_1901_6 | HRGMv2_1901_6_108 | 107512 | 107745 | - | 9.A.8.1.6 |
| TC | HRGMv2_1901_6 | HRGMv2_1901_6_109 | 108263 | 110701 | - | 3.A.3.6.10 |
Gene ID: HRGMv2_1901_6_104
Type: CAZyme
Location: 103291 - 104736 (-)
Type: CAZyme
Location: 103291 - 104736 (-)
Gene ID: HRGMv2_1901_6_105
Type: pfam
Location: 104745 - 105386 (-)
Type: pfam
Location: 104745 - 105386 (-)
Gene ID: HRGMv2_1901_6_106
Type:
Location: 105334 - 105513 (-)
Type:
Location: 105334 - 105513 (-)
Gene ID: HRGMv2_1901_6_107
Type: TC
Location: 105510 - 107519 (-)
Type: TC
Location: 105510 - 107519 (-)
Gene ID: HRGMv2_1901_6_108
Type: TC
Location: 107512 - 107745 (-)
Type: TC
Location: 107512 - 107745 (-)
Gene ID: HRGMv2_1901_6_109
Type: TC
Location: 108263 - 110701 (-)
Type: TC
Location: 108263 - 110701 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Coprobacillaceae
Genus
Coprobacillus
Species
Coprobacillus cateniformis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.