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Cluster: HRGMv2_1901_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1901_6 HRGMv2_1901_6_83 80117 81529 - GH1
TF HRGMv2_1901_6 HRGMv2_1901_6_84 81758 82600 - MerR
pfam HRGMv2_1901_6 HRGMv2_1901_6_85 82615 83358 - ABC2_membrane | ABC2_membrane_3
TC HRGMv2_1901_6 HRGMv2_1901_6_86 83355 84077 - 3.A.1.105.14
TF HRGMv2_1901_6 HRGMv2_1901_6_87 84278 85126 + HTH_AraC | HTH_AraC
TC HRGMv2_1901_6 HRGMv2_1901_6_88 85119 86447 + 2.A.66.1.37
pfam HRGMv2_1901_6 HRGMv2_1901_6_89 86726 88624 - Big_2
CAZyme HRGMv2_1901_6 HRGMv2_1901_6_90 88877 90277 - GH1
Gene ID: HRGMv2_1901_6_83
Type: CAZyme
Location: 80117 - 81529 (-)
Gene ID: HRGMv2_1901_6_84
Type: TF
Location: 81758 - 82600 (-)
Gene ID: HRGMv2_1901_6_85
Type: pfam
Location: 82615 - 83358 (-)
Gene ID: HRGMv2_1901_6_86
Type: TC
Location: 83355 - 84077 (-)
Gene ID: HRGMv2_1901_6_87
Type: TF
Location: 84278 - 85126 (+)
Gene ID: HRGMv2_1901_6_88
Type: TC
Location: 85119 - 86447 (+)
Gene ID: HRGMv2_1901_6_89
Type: pfam
Location: 86726 - 88624 (-)
Gene ID: HRGMv2_1901_6_90
Type: CAZyme
Location: 88877 - 90277 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1901_6_90 vegan > omnivore 4.20587 0.00574
HRGMv2_1901_6_90 vegetarian > omnivore 3.33732 0.03132

🧭 Explore Read Mapping of CGC

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