Cluster: HRGMv2_1901_CGC1
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_1901
- CGC Family ID: CGCFAM_03666
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1901_2 | HRGMv2_1901_2_56 | 54299 | 55696 | - | GH1 |
| CAZyme | HRGMv2_1901_2 | HRGMv2_1901_2_57 | 55807 | 57240 | - | GH1 |
| TF | HRGMv2_1901_2 | HRGMv2_1901_2_58 | 57345 | 58076 | - | MerR |
| TC | HRGMv2_1901_2 | HRGMv2_1901_2_59 | 58148 | 59479 | + | 2.A.66.1.32 |
| pfam | HRGMv2_1901_2 | HRGMv2_1901_2_60 | 59473 | 60216 | - | YdjC |
| TC | HRGMv2_1901_2 | HRGMv2_1901_2_61 | 60209 | 61486 | - | 4.A.3.2.8 |
Gene ID: HRGMv2_1901_2_56
Type: CAZyme
Location: 54299 - 55696 (-)
Type: CAZyme
Location: 54299 - 55696 (-)
Gene ID: HRGMv2_1901_2_57
Type: CAZyme
Location: 55807 - 57240 (-)
Type: CAZyme
Location: 55807 - 57240 (-)
Gene ID: HRGMv2_1901_2_58
Type: TF
Location: 57345 - 58076 (-)
Type: TF
Location: 57345 - 58076 (-)
Gene ID: HRGMv2_1901_2_59
Type: TC
Location: 58148 - 59479 (+)
Type: TC
Location: 58148 - 59479 (+)
Gene ID: HRGMv2_1901_2_60
Type: pfam
Location: 59473 - 60216 (-)
Type: pfam
Location: 59473 - 60216 (-)
Gene ID: HRGMv2_1901_2_61
Type: TC
Location: 60209 - 61486 (-)
Type: TC
Location: 60209 - 61486 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Coprobacillaceae
Genus
Coprobacillus
Species
Coprobacillus cateniformis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.