Cluster: HRGMv2_1896_CGC5
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1896
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1896_5 | HRGMv2_1896_5_34 | 37341 | 38321 | - | 9.B.146.1.6 |
| pfam | HRGMv2_1896_5 | HRGMv2_1896_5_35 | 38468 | 38659 | + | Ribosomal_L28 |
| NULL(UNKNOWN) | HRGMv2_1896_5 | HRGMv2_1896_5_36 | 38714 | 39079 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_1896_5 | HRGMv2_1896_5_37 | 39205 | 41349 | - | GH112 |
| TC | HRGMv2_1896_5 | HRGMv2_1896_5_38 | 41366 | 42457 | - | 3.A.1.1.26 |
| pfam | HRGMv2_1896_5 | HRGMv2_1896_5_39 | 42469 | 42642 | - | DUF6903 |
| TC | HRGMv2_1896_5 | HRGMv2_1896_5_40 | 42653 | 43513 | - | 3.A.1.1.18 |
| TC | HRGMv2_1896_5 | HRGMv2_1896_5_41 | 43525 | 44406 | - | 3.A.1.1.25 |
Gene ID: HRGMv2_1896_5_34
Type: TC
Location: 37341 - 38321 (-)
Type: TC
Location: 37341 - 38321 (-)
Gene ID: HRGMv2_1896_5_35
Type: pfam
Location: 38468 - 38659 (+)
Type: pfam
Location: 38468 - 38659 (+)
Gene ID: HRGMv2_1896_5_36
Type:
Location: 38714 - 39079 (-)
Type:
Location: 38714 - 39079 (-)
Gene ID: HRGMv2_1896_5_37
Type: CAZyme
Location: 39205 - 41349 (-)
Type: CAZyme
Location: 39205 - 41349 (-)
Gene ID: HRGMv2_1896_5_38
Type: TC
Location: 41366 - 42457 (-)
Type: TC
Location: 41366 - 42457 (-)
Gene ID: HRGMv2_1896_5_39
Type: pfam
Location: 42469 - 42642 (-)
Type: pfam
Location: 42469 - 42642 (-)
Gene ID: HRGMv2_1896_5_40
Type: TC
Location: 42653 - 43513 (-)
Type: TC
Location: 42653 - 43513 (-)
Gene ID: HRGMv2_1896_5_41
Type: TC
Location: 43525 - 44406 (-)
Type: TC
Location: 43525 - 44406 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Erysipelotrichaceae
Genus
Holdemanella
Species
Holdemanella sp003458715
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1896_5_35 | vegan > omnivore | 20.02995 | 0.01604 |
| HRGMv2_1896_5_35 | vegetarian > omnivore | 19.02438 | 0.01332 |
| HRGMv2_1896_5_39 | vegetarian > omnivore | 2.25709 | 0.01332 |
| HRGMv2_1896_5_39 | vegetarian > vegan | 2.31424 | 0.04105 |
| HRGMv2_1896_5_40 | vegan > omnivore | 2.01864 | 0.01604 |
| HRGMv2_1896_5_40 | vegetarian > omnivore | 1.53558 | 0.01332 |
| HRGMv2_1896_5_41 | vegan > omnivore | 2.28021 | 0.01604 |
| HRGMv2_1896_5_41 | vegetarian > omnivore | 2.58956 | 0.01332 |