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Cluster: HRGMv2_1896_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1896_4 HRGMv2_1896_4_8 7185 9053 - 3.A.3.6.10
STP HRGMv2_1896_4 HRGMv2_1896_4_9 9143 9361 - HMA
TF HRGMv2_1896_4 HRGMv2_1896_4_10 9502 9855 + HTH_5
TC HRGMv2_1896_4 HRGMv2_1896_4_11 10113 10796 + 3.A.2.1.5
TC HRGMv2_1896_4 HRGMv2_1896_4_12 10815 11036 + 3.A.2.1.5
pfam HRGMv2_1896_4 HRGMv2_1896_4_13 11049 11513 + ATP-synt_B
TC HRGMv2_1896_4 HRGMv2_1896_4_14 11514 13256 + 3.A.2.1.5
TC HRGMv2_1896_4 HRGMv2_1896_4_15 13256 14176 + 3.A.2.1.5
TC HRGMv2_1896_4 HRGMv2_1896_4_16 14167 15552 + 3.A.2.1.5
pfam HRGMv2_1896_4 HRGMv2_1896_4_17 15555 15965 + ATP-synt_DE | ATP-synt_DE_N
TC HRGMv2_1896_4 HRGMv2_1896_4_18 16030 18306 - 3.A.1.137.2
TC HRGMv2_1896_4 HRGMv2_1896_4_19 18306 19004 - 3.A.1.122.14
pfam HRGMv2_1896_4 HRGMv2_1896_4_20 19582 20073 + SRAP
CAZyme HRGMv2_1896_4 HRGMv2_1896_4_21 20084 21325 + GH29
CAZyme HRGMv2_1896_4 HRGMv2_1896_4_22 21322 22242 - GT2
Gene ID: HRGMv2_1896_4_8
Type: TC
Location: 7185 - 9053 (-)
Gene ID: HRGMv2_1896_4_9
Type: STP
Location: 9143 - 9361 (-)
Gene ID: HRGMv2_1896_4_10
Type: TF
Location: 9502 - 9855 (+)
Gene ID: HRGMv2_1896_4_11
Type: TC
Location: 10113 - 10796 (+)
Gene ID: HRGMv2_1896_4_12
Type: TC
Location: 10815 - 11036 (+)
Gene ID: HRGMv2_1896_4_13
Type: pfam
Location: 11049 - 11513 (+)
Gene ID: HRGMv2_1896_4_14
Type: TC
Location: 11514 - 13256 (+)
Gene ID: HRGMv2_1896_4_15
Type: TC
Location: 13256 - 14176 (+)
Gene ID: HRGMv2_1896_4_16
Type: TC
Location: 14167 - 15552 (+)
Gene ID: HRGMv2_1896_4_17
Type: pfam
Location: 15555 - 15965 (+)
Gene ID: HRGMv2_1896_4_18
Type: TC
Location: 16030 - 18306 (-)
Gene ID: HRGMv2_1896_4_19
Type: TC
Location: 18306 - 19004 (-)
Gene ID: HRGMv2_1896_4_20
Type: pfam
Location: 19582 - 20073 (+)
Gene ID: HRGMv2_1896_4_21
Type: CAZyme
Location: 20084 - 21325 (+)
Gene ID: HRGMv2_1896_4_22
Type: CAZyme
Location: 21322 - 22242 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1896_4_9 vegan > omnivore 1.14707 0.01604
HRGMv2_1896_4_10 vegan > omnivore 2.00087 0.01604
HRGMv2_1896_4_10 vegetarian > omnivore 2.23904 0.01332
HRGMv2_1896_4_12 vegetarian > omnivore 1.34003 0.01332
HRGMv2_1896_4_15 vegan > omnivore 2.50656 0.01604
HRGMv2_1896_4_15 vegetarian > omnivore 3.85454 0.01332
HRGMv2_1896_4_17 vegan > omnivore 19.64079 0.01604
HRGMv2_1896_4_17 vegetarian > omnivore 19.80777 0.01332
HRGMv2_1896_4_18 vegan > omnivore 1.37243 0.01604
HRGMv2_1896_4_18 vegetarian > omnivore 4.11887 0.01332
HRGMv2_1896_4_18 vegetarian > vegan 2.74645 0.04523
HRGMv2_1896_4_19 vegan > omnivore 4.32050 0.01604
HRGMv2_1896_4_19 vegetarian > omnivore 4.05903 0.01332
HRGMv2_1896_4_21 vegan > omnivore 1.97102 0.01604
HRGMv2_1896_4_21 vegetarian > omnivore 2.54988 0.01332

🧭 Explore Read Mapping of CGC

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