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Cluster: HRGMv2_1896_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1896_3 HRGMv2_1896_3_50 43055 45547 + GT51
pfam HRGMv2_1896_3 HRGMv2_1896_3_51 45596 46321 - Radical_SAM | Fer4_12
pfam HRGMv2_1896_3 HRGMv2_1896_3_52 46350 48587 - Gly_radical | PFL-like
TC HRGMv2_1896_3 HRGMv2_1896_3_53 48821 49690 - 2.A.115.1.5
TF HRGMv2_1896_3 HRGMv2_1896_3_54 49929 51041 + HTH_3
TC HRGMv2_1896_3 HRGMv2_1896_3_55 51066 52712 - 2.A.53.3.11
pfam HRGMv2_1896_3 HRGMv2_1896_3_56 52836 53999 + HlyD_3 | Biotin_lipoyl_2
TC HRGMv2_1896_3 HRGMv2_1896_3_57 53977 54675 + 3.A.1.122.2
pfam HRGMv2_1896_3 HRGMv2_1896_3_58 54672 56426 + Biotin_lipoyl_2
TC HRGMv2_1896_3 HRGMv2_1896_3_59 56423 57667 + 3.A.1.122.2
Gene ID: HRGMv2_1896_3_50
Type: CAZyme
Location: 43055 - 45547 (+)
Gene ID: HRGMv2_1896_3_51
Type: pfam
Location: 45596 - 46321 (-)
Gene ID: HRGMv2_1896_3_52
Type: pfam
Location: 46350 - 48587 (-)
Gene ID: HRGMv2_1896_3_53
Type: TC
Location: 48821 - 49690 (-)
Gene ID: HRGMv2_1896_3_54
Type: TF
Location: 49929 - 51041 (+)
Gene ID: HRGMv2_1896_3_55
Type: TC
Location: 51066 - 52712 (-)
Gene ID: HRGMv2_1896_3_56
Type: pfam
Location: 52836 - 53999 (+)
Gene ID: HRGMv2_1896_3_57
Type: TC
Location: 53977 - 54675 (+)
Gene ID: HRGMv2_1896_3_58
Type: pfam
Location: 54672 - 56426 (+)
Gene ID: HRGMv2_1896_3_59
Type: TC
Location: 56423 - 57667 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1896_3_57 vegetarian > omnivore 2.37145 0.01332
HRGMv2_1896_3_59 vegan > omnivore 3.38191 0.01604
HRGMv2_1896_3_59 vegetarian > omnivore 2.02234 0.01332

🧭 Explore Read Mapping of CGC

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