Cluster: HRGMv2_1896_CGC18
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1896
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1896_89 | HRGMv2_1896_89_3 | 1845 | 3797 | + | 3.A.16.1.1 |
| pfam | HRGMv2_1896_89 | HRGMv2_1896_89_4 | 3896 | 4780 | + | HSP33 |
| pfam | HRGMv2_1896_89 | HRGMv2_1896_89_5 | 4773 | 5738 | + | His_biosynth | His_biosynth | Dus |
| CAZyme | HRGMv2_1896_89 | HRGMv2_1896_89_6 | 5842 | 7668 | + | CBM48 | GH13_9 |
Gene ID: HRGMv2_1896_89_3
Type: TC
Location: 1845 - 3797 (+)
Type: TC
Location: 1845 - 3797 (+)
Gene ID: HRGMv2_1896_89_4
Type: pfam
Location: 3896 - 4780 (+)
Type: pfam
Location: 3896 - 4780 (+)
Gene ID: HRGMv2_1896_89_5
Type: pfam
Location: 4773 - 5738 (+)
Type: pfam
Location: 4773 - 5738 (+)
Gene ID: HRGMv2_1896_89_6
Type: CAZyme
Location: 5842 - 7668 (+)
Type: CAZyme
Location: 5842 - 7668 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Erysipelotrichaceae
Genus
Holdemanella
Species
Holdemanella sp003458715
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1896_89_4 | vegetarian > omnivore | 1.51663 | 0.01332 |
| HRGMv2_1896_89_5 | vegetarian > omnivore | 1.83514 | 0.01332 |
| HRGMv2_1896_89_6 | vegan > omnivore | 2.45087 | 0.01604 |
| HRGMv2_1896_89_6 | vegetarian > omnivore | 3.73288 | 0.01332 |