Cluster: HRGMv2_1896_CGC17
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_1896
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1896_67 | HRGMv2_1896_67_1 | 298 | 726 | + | 4.A.6.1.7 |
| pfam | HRGMv2_1896_67 | HRGMv2_1896_67_2 | 782 | 1273 | + | PTSIIB_sorb |
| pfam | HRGMv2_1896_67 | HRGMv2_1896_67_3 | 1330 | 2169 | + | EII-Sor |
| TC | HRGMv2_1896_67 | HRGMv2_1896_67_4 | 2172 | 3002 | + | 4.A.6.1.16 |
| NULL(UNKNOWN) | HRGMv2_1896_67 | HRGMv2_1896_67_5 | 3104 | 3421 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_1896_67 | HRGMv2_1896_67_6 | 3666 | 4763 | + | GT4 |
| TC | HRGMv2_1896_67 | HRGMv2_1896_67_7 | 4772 | 5812 | + | 4.D.2.1.5 |
| CAZyme | HRGMv2_1896_67 | HRGMv2_1896_67_8 | 5816 | 7783 | + | GT4 |
Gene ID: HRGMv2_1896_67_1
Type: TC
Location: 298 - 726 (+)
Type: TC
Location: 298 - 726 (+)
Gene ID: HRGMv2_1896_67_2
Type: pfam
Location: 782 - 1273 (+)
Type: pfam
Location: 782 - 1273 (+)
Gene ID: HRGMv2_1896_67_3
Type: pfam
Location: 1330 - 2169 (+)
Type: pfam
Location: 1330 - 2169 (+)
Gene ID: HRGMv2_1896_67_4
Type: TC
Location: 2172 - 3002 (+)
Type: TC
Location: 2172 - 3002 (+)
Gene ID: HRGMv2_1896_67_5
Type:
Location: 3104 - 3421 (+)
Type:
Location: 3104 - 3421 (+)
Gene ID: HRGMv2_1896_67_6
Type: CAZyme
Location: 3666 - 4763 (+)
Type: CAZyme
Location: 3666 - 4763 (+)
Gene ID: HRGMv2_1896_67_7
Type: TC
Location: 4772 - 5812 (+)
Type: TC
Location: 4772 - 5812 (+)
Gene ID: HRGMv2_1896_67_8
Type: CAZyme
Location: 5816 - 7783 (+)
Type: CAZyme
Location: 5816 - 7783 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Erysipelotrichaceae
Genus
Holdemanella
Species
Holdemanella sp003458715
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1896_67_1 | vegan > omnivore | 19.09519 | 0.01604 |
| HRGMv2_1896_67_1 | vegetarian > omnivore | 19.14660 | 0.01332 |
| HRGMv2_1896_67_2 | vegan > omnivore | 1.35022 | 0.01604 |
| HRGMv2_1896_67_2 | vegetarian > omnivore | 1.31315 | 0.01332 |
| HRGMv2_1896_67_3 | vegan > omnivore | 1.48969 | 0.01604 |
| HRGMv2_1896_67_3 | vegetarian > omnivore | 3.06397 | 0.01332 |
| HRGMv2_1896_67_4 | vegan > omnivore | 2.72319 | 0.01604 |
| HRGMv2_1896_67_4 | vegetarian > omnivore | 2.54549 | 0.01332 |
| HRGMv2_1896_67_5 | vegetarian > omnivore | 1.59167 | 0.01332 |
| HRGMv2_1896_67_6 | vegan > omnivore | 3.69301 | 0.01604 |
| HRGMv2_1896_67_6 | vegetarian > omnivore | 4.17616 | 0.01332 |
| HRGMv2_1896_67_7 | vegan > omnivore | 18.04238 | 0.01604 |
| HRGMv2_1896_67_7 | vegetarian > omnivore | 18.90939 | 0.01332 |
| HRGMv2_1896_67_8 | vegetarian > omnivore | 1.07870 | 0.01332 |