Cluster: HRGMv2_1896_CGC15
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1896
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1896_43 | HRGMv2_1896_43_7 | 5110 | 5403 | - | 4.A.3.2.6 |
| CAZyme | HRGMv2_1896_43 | HRGMv2_1896_43_8 | 5419 | 6747 | - | GH4 |
| TF | HRGMv2_1896_43 | HRGMv2_1896_43_9 | 6819 | 8720 | - | HTH_11 |
| TC | HRGMv2_1896_43 | HRGMv2_1896_43_10 | 8731 | 9993 | - | 4.A.3.2.6 |
Gene ID: HRGMv2_1896_43_7
Type: TC
Location: 5110 - 5403 (-)
Type: TC
Location: 5110 - 5403 (-)
Gene ID: HRGMv2_1896_43_8
Type: CAZyme
Location: 5419 - 6747 (-)
Type: CAZyme
Location: 5419 - 6747 (-)
Gene ID: HRGMv2_1896_43_9
Type: TF
Location: 6819 - 8720 (-)
Type: TF
Location: 6819 - 8720 (-)
Gene ID: HRGMv2_1896_43_10
Type: TC
Location: 8731 - 9993 (-)
Type: TC
Location: 8731 - 9993 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Erysipelotrichaceae
Genus
Holdemanella
Species
Holdemanella sp003458715
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1896_43_7 | vegetarian > omnivore | 2.72980 | 0.01332 |
| HRGMv2_1896_43_8 | vegan > omnivore | 1.48117 | 0.01604 |
| HRGMv2_1896_43_9 | vegan > omnivore | 3.27691 | 0.01604 |
| HRGMv2_1896_43_9 | vegetarian > omnivore | 3.98301 | 0.01332 |