Cluster: HRGMv2_1896_CGC1
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1896
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1896_1 | HRGMv2_1896_1_13 | 10916 | 11746 | + | 3.A.1.104.1 |
| TC | HRGMv2_1896_1 | HRGMv2_1896_1_14 | 11756 | 12574 | + | 3.A.1.104.2 |
| pfam | HRGMv2_1896_1 | HRGMv2_1896_1_15 | 12657 | 13043 | + | CTP_transf_like |
| CAZyme | HRGMv2_1896_1 | HRGMv2_1896_1_16 | 13045 | 15282 | + | GT2 |
| pfam | HRGMv2_1896_1 | HRGMv2_1896_1_17 | 15300 | 16502 | + | Glyphos_transf |
| pfam | HRGMv2_1896_1 | HRGMv2_1896_1_18 | 16507 | 17571 | + | Glyphos_transf |
| TC | HRGMv2_1896_1 | HRGMv2_1896_1_19 | 17957 | 19150 | + | 2.A.120.1.3 |
Gene ID: HRGMv2_1896_1_13
Type: TC
Location: 10916 - 11746 (+)
Type: TC
Location: 10916 - 11746 (+)
Gene ID: HRGMv2_1896_1_14
Type: TC
Location: 11756 - 12574 (+)
Type: TC
Location: 11756 - 12574 (+)
Gene ID: HRGMv2_1896_1_15
Type: pfam
Location: 12657 - 13043 (+)
Type: pfam
Location: 12657 - 13043 (+)
Gene ID: HRGMv2_1896_1_16
Type: CAZyme
Location: 13045 - 15282 (+)
Type: CAZyme
Location: 13045 - 15282 (+)
Gene ID: HRGMv2_1896_1_17
Type: pfam
Location: 15300 - 16502 (+)
Type: pfam
Location: 15300 - 16502 (+)
Gene ID: HRGMv2_1896_1_18
Type: pfam
Location: 16507 - 17571 (+)
Type: pfam
Location: 16507 - 17571 (+)
Gene ID: HRGMv2_1896_1_19
Type: TC
Location: 17957 - 19150 (+)
Type: TC
Location: 17957 - 19150 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Erysipelotrichaceae
Genus
Holdemanella
Species
Holdemanella sp003458715
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1896_1_14 | vegan > omnivore | 17.65817 | 0.01604 |
| HRGMv2_1896_1_14 | vegetarian > omnivore | 19.03706 | 0.01332 |
| HRGMv2_1896_1_15 | vegan > omnivore | 5.54225 | 0.01604 |
| HRGMv2_1896_1_15 | vegetarian > omnivore | 2.95675 | 0.01332 |
| HRGMv2_1896_1_16 | vegan > omnivore | 1.62725 | 0.01604 |
| HRGMv2_1896_1_16 | vegetarian > omnivore | 1.58068 | 0.01332 |
| HRGMv2_1896_1_17 | vegan > omnivore | 3.91050 | 0.01604 |
| HRGMv2_1896_1_17 | vegetarian > omnivore | 4.24931 | 0.01332 |
| HRGMv2_1896_1_19 | vegan > omnivore | 1.57868 | 0.01604 |
| HRGMv2_1896_1_19 | vegetarian > omnivore | 2.18699 | 0.01332 |