Cluster: HRGMv2_1892_CGC6
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1892
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1892_20 | HRGMv2_1892_20_17 | 11720 | 13159 | - | GT5 |
| pfam | HRGMv2_1892_20 | HRGMv2_1892_20_18 | 13159 | 14274 | - | NTP_transferase | Hexapep_GlmU |
| pfam | HRGMv2_1892_20 | HRGMv2_1892_20_19 | 14277 | 15416 | - | NTP_transferase | Hexapep_GlmU |
| TC | HRGMv2_1892_20 | HRGMv2_1892_20_20 | 15531 | 16751 | - | 2.A.49.9.3 |
Gene ID: HRGMv2_1892_20_17
Type: CAZyme
Location: 11720 - 13159 (-)
Type: CAZyme
Location: 11720 - 13159 (-)
Gene ID: HRGMv2_1892_20_18
Type: pfam
Location: 13159 - 14274 (-)
Type: pfam
Location: 13159 - 14274 (-)
Gene ID: HRGMv2_1892_20_19
Type: pfam
Location: 14277 - 15416 (-)
Type: pfam
Location: 14277 - 15416 (-)
Gene ID: HRGMv2_1892_20_20
Type: TC
Location: 15531 - 16751 (-)
Type: TC
Location: 15531 - 16751 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Erysipelotrichaceae
Genus
Holdemanella
Species
Holdemanella porci
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1892_20_20 | vegan > omnivore | 1.11074 | 0.00224 |
| HRGMv2_1892_20_20 | vegetarian > omnivore | 2.44697 | 0.01332 |