Cluster: HRGMv2_1892_CGC5
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_1892
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1892_17 | HRGMv2_1892_17_3 | 1917 | 3791 | - | PL12_1 |
| TC | HRGMv2_1892_17 | HRGMv2_1892_17_4 | 3840 | 4655 | - | 4.A.6.1.14 |
| TC | HRGMv2_1892_17 | HRGMv2_1892_17_5 | 4642 | 5424 | - | 4.A.6.1.14 |
| TC | HRGMv2_1892_17 | HRGMv2_1892_17_6 | 5438 | 5929 | - | 4.A.6.1.14 |
| CAZyme | HRGMv2_1892_17 | HRGMv2_1892_17_7 | 5948 | 7138 | - | GH88 |
Gene ID: HRGMv2_1892_17_3
Type: CAZyme
Location: 1917 - 3791 (-)
Type: CAZyme
Location: 1917 - 3791 (-)
Gene ID: HRGMv2_1892_17_4
Type: TC
Location: 3840 - 4655 (-)
Type: TC
Location: 3840 - 4655 (-)
Gene ID: HRGMv2_1892_17_5
Type: TC
Location: 4642 - 5424 (-)
Type: TC
Location: 4642 - 5424 (-)
Gene ID: HRGMv2_1892_17_6
Type: TC
Location: 5438 - 5929 (-)
Type: TC
Location: 5438 - 5929 (-)
Gene ID: HRGMv2_1892_17_7
Type: CAZyme
Location: 5948 - 7138 (-)
Type: CAZyme
Location: 5948 - 7138 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Erysipelotrichaceae
Genus
Holdemanella
Species
Holdemanella porci
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.