Cluster: HRGMv2_1892_CGC19
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1892
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1892_111 | HRGMv2_1892_111_1 | 51 | 599 | + | 2.A.51.1.6 |
| TC | HRGMv2_1892_111 | HRGMv2_1892_111_2 | 592 | 1140 | + | 2.A.51.1.6 |
| peptidase | HRGMv2_1892_111 | HRGMv2_1892_111_3 | 1432 | 2382 | + | C59.951 |
| CAZyme | HRGMv2_1892_111 | HRGMv2_1892_111_4 | 2476 | 3105 | + | GH170 |
Gene ID: HRGMv2_1892_111_1
Type: TC
Location: 51 - 599 (+)
Type: TC
Location: 51 - 599 (+)
Gene ID: HRGMv2_1892_111_2
Type: TC
Location: 592 - 1140 (+)
Type: TC
Location: 592 - 1140 (+)
Gene ID: HRGMv2_1892_111_3
Type: peptidase
Location: 1432 - 2382 (+)
Type: peptidase
Location: 1432 - 2382 (+)
Gene ID: HRGMv2_1892_111_4
Type: CAZyme
Location: 2476 - 3105 (+)
Type: CAZyme
Location: 2476 - 3105 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Erysipelotrichaceae
Genus
Holdemanella
Species
Holdemanella porci
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1892_111_3 | vegetarian > omnivore | 2.61359 | 0.01332 |
| HRGMv2_1892_111_4 | vegan > omnivore | 2.50229 | 0.00224 |
| HRGMv2_1892_111_4 | vegetarian > omnivore | 5.25934 | 0.01332 |
| HRGMv2_1892_111_4 | vegetarian > vegan | 2.75705 | 0.03830 |