Cluster: HRGMv2_1892_CGC16
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_1892
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1892_47 | HRGMv2_1892_47_6 | 3785 | 5752 | - | GT4 |
| TC | HRGMv2_1892_47 | HRGMv2_1892_47_7 | 5756 | 6796 | - | 4.D.2.1.5 |
| CAZyme | HRGMv2_1892_47 | HRGMv2_1892_47_8 | 6805 | 7887 | - | GT4 |
| NULL(UNKNOWN) | HRGMv2_1892_47 | HRGMv2_1892_47_9 | 8147 | 8464 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_1892_47 | HRGMv2_1892_47_10 | 8552 | 9382 | - | 4.A.6.1.16 |
| pfam | HRGMv2_1892_47 | HRGMv2_1892_47_11 | 9385 | 10224 | - | EII-Sor |
| pfam | HRGMv2_1892_47 | HRGMv2_1892_47_12 | 10279 | 10770 | - | PTSIIB_sorb |
| TC | HRGMv2_1892_47 | HRGMv2_1892_47_13 | 10826 | 11254 | - | 4.A.6.1.7 |
Gene ID: HRGMv2_1892_47_6
Type: CAZyme
Location: 3785 - 5752 (-)
Type: CAZyme
Location: 3785 - 5752 (-)
Gene ID: HRGMv2_1892_47_7
Type: TC
Location: 5756 - 6796 (-)
Type: TC
Location: 5756 - 6796 (-)
Gene ID: HRGMv2_1892_47_8
Type: CAZyme
Location: 6805 - 7887 (-)
Type: CAZyme
Location: 6805 - 7887 (-)
Gene ID: HRGMv2_1892_47_9
Type:
Location: 8147 - 8464 (-)
Type:
Location: 8147 - 8464 (-)
Gene ID: HRGMv2_1892_47_10
Type: TC
Location: 8552 - 9382 (-)
Type: TC
Location: 8552 - 9382 (-)
Gene ID: HRGMv2_1892_47_11
Type: pfam
Location: 9385 - 10224 (-)
Type: pfam
Location: 9385 - 10224 (-)
Gene ID: HRGMv2_1892_47_12
Type: pfam
Location: 10279 - 10770 (-)
Type: pfam
Location: 10279 - 10770 (-)
Gene ID: HRGMv2_1892_47_13
Type: TC
Location: 10826 - 11254 (-)
Type: TC
Location: 10826 - 11254 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Erysipelotrichaceae
Genus
Holdemanella
Species
Holdemanella porci
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1892_47_7 | vegan > omnivore | 18.22332 | 0.00224 |
| HRGMv2_1892_47_7 | vegetarian > omnivore | 19.25380 | 0.01332 |
| HRGMv2_1892_47_8 | vegan > omnivore | 4.13680 | 0.00224 |
| HRGMv2_1892_47_8 | vegetarian > omnivore | 3.97362 | 0.01332 |
| HRGMv2_1892_47_9 | vegetarian > omnivore | 1.48048 | 0.01332 |
| HRGMv2_1892_47_10 | vegan > omnivore | 2.90428 | 0.00224 |
| HRGMv2_1892_47_10 | vegetarian > omnivore | 2.01684 | 0.01332 |
| HRGMv2_1892_47_11 | vegan > omnivore | 3.77139 | 0.00224 |
| HRGMv2_1892_47_11 | vegetarian > omnivore | 4.97743 | 0.01332 |
| HRGMv2_1892_47_12 | vegetarian > omnivore | 1.17783 | 0.01332 |
| HRGMv2_1892_47_13 | vegan > omnivore | 19.54076 | 0.00224 |
| HRGMv2_1892_47_13 | vegetarian > omnivore | 19.13000 | 0.01332 |