Cluster: HRGMv2_1892_CGC14
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1892
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1892_36 | HRGMv2_1892_36_4 | 2684 | 3514 | + | 3.A.1.104.1 |
| TC | HRGMv2_1892_36 | HRGMv2_1892_36_5 | 3525 | 4343 | + | 3.A.1.104.2 |
| pfam | HRGMv2_1892_36 | HRGMv2_1892_36_6 | 4425 | 4811 | + | CTP_transf_like |
| CAZyme | HRGMv2_1892_36 | HRGMv2_1892_36_7 | 4813 | 7050 | + | GT2 |
Gene ID: HRGMv2_1892_36_4
Type: TC
Location: 2684 - 3514 (+)
Type: TC
Location: 2684 - 3514 (+)
Gene ID: HRGMv2_1892_36_5
Type: TC
Location: 3525 - 4343 (+)
Type: TC
Location: 3525 - 4343 (+)
Gene ID: HRGMv2_1892_36_6
Type: pfam
Location: 4425 - 4811 (+)
Type: pfam
Location: 4425 - 4811 (+)
Gene ID: HRGMv2_1892_36_7
Type: CAZyme
Location: 4813 - 7050 (+)
Type: CAZyme
Location: 4813 - 7050 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Erysipelotrichaceae
Genus
Holdemanella
Species
Holdemanella porci
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1892_36_4 | vegan > omnivore | 19.88883 | 0.00224 |
| HRGMv2_1892_36_4 | vegetarian > omnivore | 19.40032 | 0.01332 |
| HRGMv2_1892_36_5 | vegan > omnivore | 1.51177 | 0.00224 |
| HRGMv2_1892_36_5 | vegetarian > omnivore | 2.23005 | 0.01332 |
| HRGMv2_1892_36_6 | vegan > omnivore | 1.25717 | 0.00224 |
| HRGMv2_1892_36_7 | vegan > omnivore | 2.51781 | 0.00224 |
| HRGMv2_1892_36_7 | vegetarian > omnivore | 2.27281 | 0.01332 |