Cluster: HRGMv2_1892_CGC11
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1892
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1892_31 | HRGMv2_1892_31_10 | 10677 | 13229 | - | 3.A.9.1.2 |
| pfam | HRGMv2_1892_31 | HRGMv2_1892_31_11 | 13352 | 14020 | - | TAL_FSA |
| TF | HRGMv2_1892_31 | HRGMv2_1892_31_12 | 14161 | 14904 | + | HTH_DeoR |
| CAZyme | HRGMv2_1892_31 | HRGMv2_1892_31_13 | 14921 | 16060 | - | CE9 |
Gene ID: HRGMv2_1892_31_10
Type: TC
Location: 10677 - 13229 (-)
Type: TC
Location: 10677 - 13229 (-)
Gene ID: HRGMv2_1892_31_11
Type: pfam
Location: 13352 - 14020 (-)
Type: pfam
Location: 13352 - 14020 (-)
Gene ID: HRGMv2_1892_31_12
Type: TF
Location: 14161 - 14904 (+)
Type: TF
Location: 14161 - 14904 (+)
Gene ID: HRGMv2_1892_31_13
Type: CAZyme
Location: 14921 - 16060 (-)
Type: CAZyme
Location: 14921 - 16060 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Erysipelotrichaceae
Genus
Holdemanella
Species
Holdemanella porci
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1892_31_13 | vegetarian > omnivore | 1.65553 | 0.01332 |