Cluster: HRGMv2_1892_CGC10
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1892
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1892_26 | HRGMv2_1892_26_18 | 14301 | 16256 | + | 3.A.16.1.1 |
| pfam | HRGMv2_1892_26 | HRGMv2_1892_26_19 | 16357 | 17241 | + | HSP33 |
| pfam | HRGMv2_1892_26 | HRGMv2_1892_26_20 | 17234 | 18199 | + | His_biosynth | His_biosynth | Dus |
| CAZyme | HRGMv2_1892_26 | HRGMv2_1892_26_21 | 18303 | 20129 | + | CBM48 | GH13_9 |
Gene ID: HRGMv2_1892_26_18
Type: TC
Location: 14301 - 16256 (+)
Type: TC
Location: 14301 - 16256 (+)
Gene ID: HRGMv2_1892_26_19
Type: pfam
Location: 16357 - 17241 (+)
Type: pfam
Location: 16357 - 17241 (+)
Gene ID: HRGMv2_1892_26_20
Type: pfam
Location: 17234 - 18199 (+)
Type: pfam
Location: 17234 - 18199 (+)
Gene ID: HRGMv2_1892_26_21
Type: CAZyme
Location: 18303 - 20129 (+)
Type: CAZyme
Location: 18303 - 20129 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Erysipelotrichaceae
Genus
Holdemanella
Species
Holdemanella porci
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1892_26_19 | vegetarian > omnivore | 1.55688 | 0.01332 |
| HRGMv2_1892_26_20 | vegetarian > omnivore | 1.91057 | 0.01332 |
| HRGMv2_1892_26_21 | vegan > omnivore | 2.46353 | 0.00224 |
| HRGMv2_1892_26_21 | vegetarian > omnivore | 3.98760 | 0.01332 |