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Cluster: HRGMv2_1888_CGC9

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1888_24 HRGMv2_1888_24_2 1043 2017 - 8.A.5.1.4
pfam HRGMv2_1888_24 HRGMv2_1888_24_3 2014 2424 - Flavodoxin_2 | FMN_red
CAZyme HRGMv2_1888_24 HRGMv2_1888_24_4 2708 4174 - GH1
TC HRGMv2_1888_24 HRGMv2_1888_24_5 4167 5423 - 4.A.3.2.2
TF HRGMv2_1888_24 HRGMv2_1888_24_6 5548 6453 - HTH_AraC
peptidase HRGMv2_1888_24 HRGMv2_1888_24_7 6521 7471 - S09.UPW
CAZyme HRGMv2_1888_24 HRGMv2_1888_24_8 7464 10199 - CBM67 | GH78
TC HRGMv2_1888_24 HRGMv2_1888_24_9 10265 11689 - 2.A.2.3.3
CAZyme HRGMv2_1888_24 HRGMv2_1888_24_10 11705 14002 - GH3
Gene ID: HRGMv2_1888_24_2
Type: TC
Location: 1043 - 2017 (-)
Gene ID: HRGMv2_1888_24_3
Type: pfam
Location: 2014 - 2424 (-)
Gene ID: HRGMv2_1888_24_4
Type: CAZyme
Location: 2708 - 4174 (-)
Gene ID: HRGMv2_1888_24_5
Type: TC
Location: 4167 - 5423 (-)
Gene ID: HRGMv2_1888_24_6
Type: TF
Location: 5548 - 6453 (-)
Gene ID: HRGMv2_1888_24_7
Type: peptidase
Location: 6521 - 7471 (-)
Gene ID: HRGMv2_1888_24_8
Type: CAZyme
Location: 7464 - 10199 (-)
Gene ID: HRGMv2_1888_24_9
Type: TC
Location: 10265 - 11689 (-)
Gene ID: HRGMv2_1888_24_10
Type: CAZyme
Location: 11705 - 14002 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1888_24_3 vegan > omnivore 20.84676 0.01332

🧭 Explore Read Mapping of CGC

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