Cluster: HRGMv2_1888_CGC8
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1888
- CGC Family ID: CGCFAM_05785
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1888_23 | HRGMv2_1888_23_9 | 7573 | 8163 | + | 2.A.87.1.3 |
| STP | HRGMv2_1888_23 | HRGMv2_1888_23_10 | 8235 | 9560 | + | ACT |
| NULL(UNKNOWN) | HRGMv2_1888_23 | HRGMv2_1888_23_11 | 9836 | 10624 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_1888_23 | HRGMv2_1888_23_12 | 10789 | 12186 | + | GH13_5 |
Gene ID: HRGMv2_1888_23_9
Type: TC
Location: 7573 - 8163 (+)
Type: TC
Location: 7573 - 8163 (+)
Gene ID: HRGMv2_1888_23_10
Type: STP
Location: 8235 - 9560 (+)
Type: STP
Location: 8235 - 9560 (+)
Gene ID: HRGMv2_1888_23_11
Type:
Location: 9836 - 10624 (-)
Type:
Location: 9836 - 10624 (-)
Gene ID: HRGMv2_1888_23_12
Type: CAZyme
Location: 10789 - 12186 (+)
Type: CAZyme
Location: 10789 - 12186 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Coprobacillaceae
Genus
Catenibacterium
Species
Catenibacterium sp900540685
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.