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Cluster: HRGMv2_1888_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1888_20 HRGMv2_1888_20_12 14356 15813 - 2.A.66.2.16
CAZyme HRGMv2_1888_20 HRGMv2_1888_20_13 15892 16917 - GT113
CAZyme HRGMv2_1888_20 HRGMv2_1888_20_14 16934 18049 - GT4
pfam HRGMv2_1888_20 HRGMv2_1888_20_15 18101 19201 - Amino_oxidase | GLF | NAD_binding_8
NULL(UNKNOWN) HRGMv2_1888_20 HRGMv2_1888_20_16 19194 20465 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_1888_20 HRGMv2_1888_20_17 20481 22058 - 3.A.1.5.19
CAZyme HRGMv2_1888_20 HRGMv2_1888_20_18 22058 22834 - GT111
TC HRGMv2_1888_20 HRGMv2_1888_20_19 22848 24293 - 9.B.18.1.2
Gene ID: HRGMv2_1888_20_12
Type: TC
Location: 14356 - 15813 (-)
Gene ID: HRGMv2_1888_20_13
Type: CAZyme
Location: 15892 - 16917 (-)
Gene ID: HRGMv2_1888_20_14
Type: CAZyme
Location: 16934 - 18049 (-)
Gene ID: HRGMv2_1888_20_15
Type: pfam
Location: 18101 - 19201 (-)
Gene ID: HRGMv2_1888_20_16
Type:
Location: 19194 - 20465 (-)
Gene ID: HRGMv2_1888_20_17
Type: TC
Location: 20481 - 22058 (-)
Gene ID: HRGMv2_1888_20_18
Type: CAZyme
Location: 22058 - 22834 (-)
Gene ID: HRGMv2_1888_20_19
Type: TC
Location: 22848 - 24293 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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