Cluster: HRGMv2_1888_CGC5
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_1888
- CGC Family ID: CGCFAM_03310
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1888_20 | HRGMv2_1888_20_3 | 2142 | 2933 | + | 3.A.1.132.3 |
| pfam | HRGMv2_1888_20 | HRGMv2_1888_20_4 | 2937 | 3221 | + | Dabb |
| pfam | HRGMv2_1888_20 | HRGMv2_1888_20_5 | 3318 | 4238 | + | NTP_transferase |
| CAZyme | HRGMv2_1888_20 | HRGMv2_1888_20_6 | 4298 | 7735 | - | GH53 | GH53 |
| CAZyme | HRGMv2_1888_20 | HRGMv2_1888_20_7 | 7862 | 8962 | - | GT4 |
| CAZyme | HRGMv2_1888_20 | HRGMv2_1888_20_8 | 8973 | 9980 | - | GT2 |
Gene ID: HRGMv2_1888_20_3
Type: TC
Location: 2142 - 2933 (+)
Type: TC
Location: 2142 - 2933 (+)
Gene ID: HRGMv2_1888_20_4
Type: pfam
Location: 2937 - 3221 (+)
Type: pfam
Location: 2937 - 3221 (+)
Gene ID: HRGMv2_1888_20_5
Type: pfam
Location: 3318 - 4238 (+)
Type: pfam
Location: 3318 - 4238 (+)
Gene ID: HRGMv2_1888_20_6
Type: CAZyme
Location: 4298 - 7735 (-)
Type: CAZyme
Location: 4298 - 7735 (-)
Gene ID: HRGMv2_1888_20_7
Type: CAZyme
Location: 7862 - 8962 (-)
Type: CAZyme
Location: 7862 - 8962 (-)
Gene ID: HRGMv2_1888_20_8
Type: CAZyme
Location: 8973 - 9980 (-)
Type: CAZyme
Location: 8973 - 9980 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Coprobacillaceae
Genus
Catenibacterium
Species
Catenibacterium sp900540685
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.