Cluster: HRGMv2_1888_CGC4
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1888
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1888_15 | HRGMv2_1888_15_18 | 18661 | 20394 | - | 3.A.1.106.2 |
| pfam | HRGMv2_1888_15 | HRGMv2_1888_15_19 | 20433 | 21191 | - | S6PP | Hydrolase_3 |
| NULL(UNKNOWN) | HRGMv2_1888_15 | HRGMv2_1888_15_20 | 21239 | 21349 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_1888_15 | HRGMv2_1888_15_21 | 21412 | 22725 | - | GH32 |
| pfam | HRGMv2_1888_15 | HRGMv2_1888_15_22 | 22905 | 24044 | - | OrfB_IS605 | Cas12f1-like_TNB |
| pfam | HRGMv2_1888_15 | HRGMv2_1888_15_23 | 24122 | 24526 | + | Y1_Tnp |
| TC | HRGMv2_1888_15 | HRGMv2_1888_15_24 | 24890 | 25795 | - | 8.A.21.2.2 |
Gene ID: HRGMv2_1888_15_18
Type: TC
Location: 18661 - 20394 (-)
Type: TC
Location: 18661 - 20394 (-)
Gene ID: HRGMv2_1888_15_19
Type: pfam
Location: 20433 - 21191 (-)
Type: pfam
Location: 20433 - 21191 (-)
Gene ID: HRGMv2_1888_15_20
Type:
Location: 21239 - 21349 (-)
Type:
Location: 21239 - 21349 (-)
Gene ID: HRGMv2_1888_15_21
Type: CAZyme
Location: 21412 - 22725 (-)
Type: CAZyme
Location: 21412 - 22725 (-)
Gene ID: HRGMv2_1888_15_22
Type: pfam
Location: 22905 - 24044 (-)
Type: pfam
Location: 22905 - 24044 (-)
Gene ID: HRGMv2_1888_15_23
Type: pfam
Location: 24122 - 24526 (+)
Type: pfam
Location: 24122 - 24526 (+)
Gene ID: HRGMv2_1888_15_24
Type: TC
Location: 24890 - 25795 (-)
Type: TC
Location: 24890 - 25795 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Coprobacillaceae
Genus
Catenibacterium
Species
Catenibacterium sp900540685
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.