Cluster: HRGMv2_1888_CGC3
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1888
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1888_10 | HRGMv2_1888_10_6 | 5172 | 6260 | - | GT28 |
| pfam | HRGMv2_1888_10 | HRGMv2_1888_10_7 | 6272 | 7612 | - | Mur_ligase_C | Mur_ligase_M | MurD-like_N |
| TC | HRGMv2_1888_10 | HRGMv2_1888_10_8 | 7613 | 8581 | - | 9.B.146.1.6 |
Gene ID: HRGMv2_1888_10_6
Type: CAZyme
Location: 5172 - 6260 (-)
Type: CAZyme
Location: 5172 - 6260 (-)
Gene ID: HRGMv2_1888_10_7
Type: pfam
Location: 6272 - 7612 (-)
Type: pfam
Location: 6272 - 7612 (-)
Gene ID: HRGMv2_1888_10_8
Type: TC
Location: 7613 - 8581 (-)
Type: TC
Location: 7613 - 8581 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Coprobacillaceae
Genus
Catenibacterium
Species
Catenibacterium sp900540685
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.