Cluster: HRGMv2_1888_CGC2
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate: host glycan/beta-glucan
- Genome ID: HRGMv2_1888
- CGC Family ID: CGCFAM_00020
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1888_6 | HRGMv2_1888_6_1 | 1 | 774 | + | GT35 |
| pfam | HRGMv2_1888_6 | HRGMv2_1888_6_2 | 774 | 1028 | + | DUF1292 |
| TC | HRGMv2_1888_6 | HRGMv2_1888_6_3 | 1297 | 3150 | + | 4.A.1.2.11 |
| CAZyme | HRGMv2_1888_6 | HRGMv2_1888_6_4 | 3156 | 4622 | + | GH1 |
| pfam | HRGMv2_1888_6 | HRGMv2_1888_6_5 | 4643 | 5482 | + | PRD | PRD | CAT_RBD |
| CAZyme | HRGMv2_1888_6 | HRGMv2_1888_6_6 | 5608 | 7695 | + | GH13_14 |
Gene ID: HRGMv2_1888_6_1
Type: CAZyme
Location: 1 - 774 (+)
Type: CAZyme
Location: 1 - 774 (+)
Gene ID: HRGMv2_1888_6_2
Type: pfam
Location: 774 - 1028 (+)
Type: pfam
Location: 774 - 1028 (+)
Gene ID: HRGMv2_1888_6_3
Type: TC
Location: 1297 - 3150 (+)
Type: TC
Location: 1297 - 3150 (+)
Gene ID: HRGMv2_1888_6_4
Type: CAZyme
Location: 3156 - 4622 (+)
Type: CAZyme
Location: 3156 - 4622 (+)
Gene ID: HRGMv2_1888_6_5
Type: pfam
Location: 4643 - 5482 (+)
Type: pfam
Location: 4643 - 5482 (+)
Gene ID: HRGMv2_1888_6_6
Type: CAZyme
Location: 5608 - 7695 (+)
Type: CAZyme
Location: 5608 - 7695 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Coprobacillaceae
Genus
Catenibacterium
Species
Catenibacterium sp900540685
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.