Cluster: HRGMv2_1888_CGC19
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1888
- CGC Family ID: CGCFAM_02352
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1888_90 | HRGMv2_1888_90_5 | 3724 | 5136 | + | GH1 |
| TC | HRGMv2_1888_90 | HRGMv2_1888_90_6 | 5273 | 6583 | + | 3.D.6.1.2 |
| TC | HRGMv2_1888_90 | HRGMv2_1888_90_7 | 6593 | 7522 | + | 3.D.6.1.2 |
| TC | HRGMv2_1888_90 | HRGMv2_1888_90_8 | 7519 | 8136 | + | 3.D.6.1.2 |
Gene ID: HRGMv2_1888_90_5
Type: CAZyme
Location: 3724 - 5136 (+)
Type: CAZyme
Location: 3724 - 5136 (+)
Gene ID: HRGMv2_1888_90_6
Type: TC
Location: 5273 - 6583 (+)
Type: TC
Location: 5273 - 6583 (+)
Gene ID: HRGMv2_1888_90_7
Type: TC
Location: 6593 - 7522 (+)
Type: TC
Location: 6593 - 7522 (+)
Gene ID: HRGMv2_1888_90_8
Type: TC
Location: 7519 - 8136 (+)
Type: TC
Location: 7519 - 8136 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Coprobacillaceae
Genus
Catenibacterium
Species
Catenibacterium sp900540685
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1888_90_5 | vegan > omnivore | 1.44760 | 0.01332 |