Cluster: HRGMv2_1888_CGC15
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_1888
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1888_73 | HRGMv2_1888_73_1 | 78 | 1664 | + | 2.A.2.3.7 |
| CAZyme | HRGMv2_1888_73 | HRGMv2_1888_73_2 | 1661 | 4063 | + | GH3 |
| CAZyme | HRGMv2_1888_73 | HRGMv2_1888_73_3 | 4050 | 6635 | + | CBM67 | GH78 |
| NULL(UNKNOWN) | HRGMv2_1888_73 | HRGMv2_1888_73_4 | 6701 | 6946 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_1888_73 | HRGMv2_1888_73_5 | 7115 | 8338 | + | DUF218 |
| TC | HRGMv2_1888_73 | HRGMv2_1888_73_6 | 8464 | 9834 | + | 2.A.22.5.3 |
Gene ID: HRGMv2_1888_73_1
Type: TC
Location: 78 - 1664 (+)
Type: TC
Location: 78 - 1664 (+)
Gene ID: HRGMv2_1888_73_2
Type: CAZyme
Location: 1661 - 4063 (+)
Type: CAZyme
Location: 1661 - 4063 (+)
Gene ID: HRGMv2_1888_73_3
Type: CAZyme
Location: 4050 - 6635 (+)
Type: CAZyme
Location: 4050 - 6635 (+)
Gene ID: HRGMv2_1888_73_4
Type:
Location: 6701 - 6946 (+)
Type:
Location: 6701 - 6946 (+)
Gene ID: HRGMv2_1888_73_5
Type: pfam
Location: 7115 - 8338 (+)
Type: pfam
Location: 7115 - 8338 (+)
Gene ID: HRGMv2_1888_73_6
Type: TC
Location: 8464 - 9834 (+)
Type: TC
Location: 8464 - 9834 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Coprobacillaceae
Genus
Catenibacterium
Species
Catenibacterium sp900540685
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.