Cluster: HRGMv2_1888_CGC13
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1888
- CGC Family ID: CGCFAM_01206
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1888_59 | HRGMv2_1888_59_2 | 1030 | 2370 | - | 2.A.23.1.5 |
| NULL(UNKNOWN) | HRGMv2_1888_59 | HRGMv2_1888_59_3 | 2504 | 2677 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_1888_59 | HRGMv2_1888_59_4 | 2674 | 3540 | - | Bact_surface_Ig-like |
| TC | HRGMv2_1888_59 | HRGMv2_1888_59_5 | 3675 | 5027 | - | 2.A.66.1.32 |
| CAZyme | HRGMv2_1888_59 | HRGMv2_1888_59_6 | 5278 | 7605 | + | GH3 |
Gene ID: HRGMv2_1888_59_2
Type: TC
Location: 1030 - 2370 (-)
Type: TC
Location: 1030 - 2370 (-)
Gene ID: HRGMv2_1888_59_3
Type:
Location: 2504 - 2677 (+)
Type:
Location: 2504 - 2677 (+)
Gene ID: HRGMv2_1888_59_4
Type: pfam
Location: 2674 - 3540 (-)
Type: pfam
Location: 2674 - 3540 (-)
Gene ID: HRGMv2_1888_59_5
Type: TC
Location: 3675 - 5027 (-)
Type: TC
Location: 3675 - 5027 (-)
Gene ID: HRGMv2_1888_59_6
Type: CAZyme
Location: 5278 - 7605 (+)
Type: CAZyme
Location: 5278 - 7605 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Coprobacillaceae
Genus
Catenibacterium
Species
Catenibacterium sp900540685
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.