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Cluster: HRGMv2_1878_CGC52

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1878_27 HRGMv2_1878_27_27 27851 29200 + 2.A.40.7.5
TC HRGMv2_1878_27 HRGMv2_1878_27_28 29352 30998 + 2.A.36.3.1
TF HRGMv2_1878_27 HRGMv2_1878_27_29 31093 31977 - HTH_1
TC HRGMv2_1878_27 HRGMv2_1878_27_30 32079 32489 + 1.E.14.1.9
TC HRGMv2_1878_27 HRGMv2_1878_27_31 32482 33171 + 2.A.122.1.1
TC HRGMv2_1878_27 HRGMv2_1878_27_32 33246 34520 - 3.A.1.1.11
CAZyme HRGMv2_1878_27 HRGMv2_1878_27_33 34619 35914 - GH177
NULL(UNKNOWN) HRGMv2_1878_27 HRGMv2_1878_27_34 35962 37539 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_1878_27 HRGMv2_1878_27_35 37750 39399 - 2.A.21.7.2
TC HRGMv2_1878_27 HRGMv2_1878_27_36 39396 39710 - 9.B.136.1.1
TC HRGMv2_1878_27 HRGMv2_1878_27_37 39851 41809 - 4.C.1.1.6
TC HRGMv2_1878_27 HRGMv2_1878_27_38 42230 43543 + 2.A.23.1.1
pfam HRGMv2_1878_27 HRGMv2_1878_27_39 43631 44305 - Sel1 | Sel1 | Sel1 | Sel1
TC HRGMv2_1878_27 HRGMv2_1878_27_40 44560 46239 - 3.D.1.9.2
TC HRGMv2_1878_27 HRGMv2_1878_27_41 46288 46707 - 3.D.1.9.2
Gene ID: HRGMv2_1878_27_27
Type: TC
Location: 27851 - 29200 (+)
Gene ID: HRGMv2_1878_27_28
Type: TC
Location: 29352 - 30998 (+)
Gene ID: HRGMv2_1878_27_29
Type: TF
Location: 31093 - 31977 (-)
Gene ID: HRGMv2_1878_27_30
Type: TC
Location: 32079 - 32489 (+)
Gene ID: HRGMv2_1878_27_31
Type: TC
Location: 32482 - 33171 (+)
Gene ID: HRGMv2_1878_27_32
Type: TC
Location: 33246 - 34520 (-)
Gene ID: HRGMv2_1878_27_33
Type: CAZyme
Location: 34619 - 35914 (-)
Gene ID: HRGMv2_1878_27_34
Type:
Location: 35962 - 37539 (+)
Gene ID: HRGMv2_1878_27_35
Type: TC
Location: 37750 - 39399 (-)
Gene ID: HRGMv2_1878_27_36
Type: TC
Location: 39396 - 39710 (-)
Gene ID: HRGMv2_1878_27_37
Type: TC
Location: 39851 - 41809 (-)
Gene ID: HRGMv2_1878_27_38
Type: TC
Location: 42230 - 43543 (+)
Gene ID: HRGMv2_1878_27_39
Type: pfam
Location: 43631 - 44305 (-)
Gene ID: HRGMv2_1878_27_40
Type: TC
Location: 44560 - 46239 (-)
Gene ID: HRGMv2_1878_27_41
Type: TC
Location: 46288 - 46707 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1878_27_30 vegetarian > omnivore 1.97187 0.02798
HRGMv2_1878_27_30 vegetarian > vegan 1.03161 0.03350

🧭 Explore Read Mapping of CGC

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