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Cluster: HRGMv2_1878_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1878_1 HRGMv2_1878_1_244 276019 277875 + 9.B.22.2.1
TC HRGMv2_1878_1 HRGMv2_1878_1_245 278415 279998 - 2.A.109.2.3
TC HRGMv2_1878_1 HRGMv2_1878_1_246 280691 281827 + 1.B.18.3.1
pfam HRGMv2_1878_1 HRGMv2_1878_1_247 281833 282276 + LMWPc
TC HRGMv2_1878_1 HRGMv2_1878_1_248 282279 284441 + 8.A.3.3.2
CAZyme HRGMv2_1878_1 HRGMv2_1878_1_249 284441 285301 + GT2
pfam HRGMv2_1878_1 HRGMv2_1878_1_250 285301 285792 + Hexapep
CAZyme HRGMv2_1878_1 HRGMv2_1878_1_251 285789 287006 + GT4
NULL(UNKNOWN) HRGMv2_1878_1 HRGMv2_1878_1_252 286981 288201 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_1878_1 HRGMv2_1878_1_253 288213 288959 + GT2
Gene ID: HRGMv2_1878_1_244
Type: TC
Location: 276019 - 277875 (+)
Gene ID: HRGMv2_1878_1_245
Type: TC
Location: 278415 - 279998 (-)
Gene ID: HRGMv2_1878_1_246
Type: TC
Location: 280691 - 281827 (+)
Gene ID: HRGMv2_1878_1_247
Type: pfam
Location: 281833 - 282276 (+)
Gene ID: HRGMv2_1878_1_248
Type: TC
Location: 282279 - 284441 (+)
Gene ID: HRGMv2_1878_1_249
Type: CAZyme
Location: 284441 - 285301 (+)
Gene ID: HRGMv2_1878_1_250
Type: pfam
Location: 285301 - 285792 (+)
Gene ID: HRGMv2_1878_1_251
Type: CAZyme
Location: 285789 - 287006 (+)
Gene ID: HRGMv2_1878_1_252
Type:
Location: 286981 - 288201 (+)
Gene ID: HRGMv2_1878_1_253
Type: CAZyme
Location: 288213 - 288959 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1878_1_249 vegetarian > vegan 1.22266 0.02425
HRGMv2_1878_1_250 vegetarian > vegan 1.51582 0.03350

🧭 Explore Read Mapping of CGC

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