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Cluster: HRGMv2_1819_CGC25

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1819_28 HRGMv2_1819_28_22 23519 24520 + 3.A.1.13.1
TC HRGMv2_1819_28 HRGMv2_1819_28_23 24526 25299 + 3.A.1.13.1
STP HRGMv2_1819_28 HRGMv2_1819_28_24 25419 26564 + Aminotran_1_2
CAZyme HRGMv2_1819_28 HRGMv2_1819_28_25 26564 27556 + GT2
pfam HRGMv2_1819_28 HRGMv2_1819_28_26 27556 29541 + Formyl_trans_N | Epimerase | Formyl_trans_C | GDP_Man_Dehyd
pfam HRGMv2_1819_28 HRGMv2_1819_28_27 29541 30434 + Polysacc_deac_1
CAZyme HRGMv2_1819_28 HRGMv2_1819_28_28 30442 32100 + GT83
TC HRGMv2_1819_28 HRGMv2_1819_28_29 32097 32444 + 2.A.7.22.2
TC HRGMv2_1819_28 HRGMv2_1819_28_30 32441 32848 + 2.A.7.22.1
Gene ID: HRGMv2_1819_28_22
Type: TC
Location: 23519 - 24520 (+)
Gene ID: HRGMv2_1819_28_23
Type: TC
Location: 24526 - 25299 (+)
Gene ID: HRGMv2_1819_28_24
Type: STP
Location: 25419 - 26564 (+)
Gene ID: HRGMv2_1819_28_25
Type: CAZyme
Location: 26564 - 27556 (+)
Gene ID: HRGMv2_1819_28_26
Type: pfam
Location: 27556 - 29541 (+)
Gene ID: HRGMv2_1819_28_27
Type: pfam
Location: 29541 - 30434 (+)
Gene ID: HRGMv2_1819_28_28
Type: CAZyme
Location: 30442 - 32100 (+)
Gene ID: HRGMv2_1819_28_29
Type: TC
Location: 32097 - 32444 (+)
Gene ID: HRGMv2_1819_28_30
Type: TC
Location: 32441 - 32848 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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