Cluster: HRGMv2_1819_CGC24
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1819
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1819_28 | HRGMv2_1819_28_3 | 5969 | 6835 | - | 3.A.1.15.4 |
| TC | HRGMv2_1819_28 | HRGMv2_1819_28_4 | 6828 | 7718 | - | 3.A.1.15.4 |
| TC | HRGMv2_1819_28 | HRGMv2_1819_28_5 | 7715 | 8605 | - | 3.A.1.15.4 |
| TC | HRGMv2_1819_28 | HRGMv2_1819_28_6 | 8607 | 9518 | - | 3.A.1.15.4 |
| CAZyme | HRGMv2_1819_28 | HRGMv2_1819_28_7 | 9802 | 10455 | + | GH23 |
| TC | HRGMv2_1819_28 | HRGMv2_1819_28_8 | 10449 | 11153 | - | 2.A.95.1.1 |
Gene ID: HRGMv2_1819_28_3
Type: TC
Location: 5969 - 6835 (-)
Type: TC
Location: 5969 - 6835 (-)
Gene ID: HRGMv2_1819_28_4
Type: TC
Location: 6828 - 7718 (-)
Type: TC
Location: 6828 - 7718 (-)
Gene ID: HRGMv2_1819_28_5
Type: TC
Location: 7715 - 8605 (-)
Type: TC
Location: 7715 - 8605 (-)
Gene ID: HRGMv2_1819_28_6
Type: TC
Location: 8607 - 9518 (-)
Type: TC
Location: 8607 - 9518 (-)
Gene ID: HRGMv2_1819_28_7
Type: CAZyme
Location: 9802 - 10455 (+)
Type: CAZyme
Location: 9802 - 10455 (+)
Gene ID: HRGMv2_1819_28_8
Type: TC
Location: 10449 - 11153 (-)
Type: TC
Location: 10449 - 11153 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Providencia
Species
Providencia rettgeri
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.