Cluster: HRGMv2_1819_CGC15
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1819
- CGC Family ID: CGCFAM_09877
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1819_15 | HRGMv2_1819_15_12 | 12200 | 13831 | + | 2.A.21.3.2 |
| TC | HRGMv2_1819_15 | HRGMv2_1819_15_13 | 14119 | 16194 | + | 1.B.14.1.10 |
| TC | HRGMv2_1819_15 | HRGMv2_1819_15_14 | 16243 | 17025 | + | 3.A.1.14.3 |
| TC | HRGMv2_1819_15 | HRGMv2_1819_15_15 | 17016 | 17942 | + | 3.A.1.14.1 |
| TC | HRGMv2_1819_15 | HRGMv2_1819_15_16 | 17932 | 19902 | + | 3.A.1.14.3 |
| TF | HRGMv2_1819_15 | HRGMv2_1819_15_17 | 20079 | 21059 | - | LacI |
| pfam | HRGMv2_1819_15 | HRGMv2_1819_15_18 | 21329 | 22246 | + | Acetyltransf_1 | Acetyltransf_7 |
| TC | HRGMv2_1819_15 | HRGMv2_1819_15_19 | 22274 | 23524 | + | 2.A.1.10.4 |
| pfam | HRGMv2_1819_15 | HRGMv2_1819_15_20 | 23526 | 24602 | + | GFO_IDH_MocA | GFO_IDH_MocA_C | GFO_IDH_MocA_C3 |
| pfam | HRGMv2_1819_15 | HRGMv2_1819_15_21 | 24599 | 25663 | + | AP_endonuc_2 |
| CAZyme | HRGMv2_1819_15 | HRGMv2_1819_15_22 | 25675 | 26814 | + | GH109 |
| TC | HRGMv2_1819_15 | HRGMv2_1819_15_23 | 27127 | 27462 | - | 2.A.7.1.11 |
Gene ID: HRGMv2_1819_15_12
Type: TC
Location: 12200 - 13831 (+)
Type: TC
Location: 12200 - 13831 (+)
Gene ID: HRGMv2_1819_15_13
Type: TC
Location: 14119 - 16194 (+)
Type: TC
Location: 14119 - 16194 (+)
Gene ID: HRGMv2_1819_15_14
Type: TC
Location: 16243 - 17025 (+)
Type: TC
Location: 16243 - 17025 (+)
Gene ID: HRGMv2_1819_15_15
Type: TC
Location: 17016 - 17942 (+)
Type: TC
Location: 17016 - 17942 (+)
Gene ID: HRGMv2_1819_15_16
Type: TC
Location: 17932 - 19902 (+)
Type: TC
Location: 17932 - 19902 (+)
Gene ID: HRGMv2_1819_15_17
Type: TF
Location: 20079 - 21059 (-)
Type: TF
Location: 20079 - 21059 (-)
Gene ID: HRGMv2_1819_15_18
Type: pfam
Location: 21329 - 22246 (+)
Type: pfam
Location: 21329 - 22246 (+)
Gene ID: HRGMv2_1819_15_19
Type: TC
Location: 22274 - 23524 (+)
Type: TC
Location: 22274 - 23524 (+)
Gene ID: HRGMv2_1819_15_20
Type: pfam
Location: 23526 - 24602 (+)
Type: pfam
Location: 23526 - 24602 (+)
Gene ID: HRGMv2_1819_15_21
Type: pfam
Location: 24599 - 25663 (+)
Type: pfam
Location: 24599 - 25663 (+)
Gene ID: HRGMv2_1819_15_22
Type: CAZyme
Location: 25675 - 26814 (+)
Type: CAZyme
Location: 25675 - 26814 (+)
Gene ID: HRGMv2_1819_15_23
Type: TC
Location: 27127 - 27462 (-)
Type: TC
Location: 27127 - 27462 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Providencia
Species
Providencia rettgeri
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.