dbCAN Logo

Cluster: HRGMv2_1815_CGC54

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1815_29 HRGMv2_1815_29_23 23083 25488 + GH20
TF HRGMv2_1815_29 HRGMv2_1815_29_24 25519 26523 - LacI
TC HRGMv2_1815_29 HRGMv2_1815_29_25 26716 28980 + 5.A.3.4.1
pfam HRGMv2_1815_29 HRGMv2_1815_29_26 29260 30987 + Transpeptidase | PBP_dimer
TC HRGMv2_1815_29 HRGMv2_1815_29_27 31467 32678 + 2.A.6.2.39
TC HRGMv2_1815_29 HRGMv2_1815_29_28 32675 35875 + 2.A.6.2.39
TC HRGMv2_1815_29 HRGMv2_1815_29_29 35872 38973 + 2.A.6.2.12
TC HRGMv2_1815_29 HRGMv2_1815_29_30 38977 40365 + 2.A.6.2.39
TC HRGMv2_1815_29 HRGMv2_1815_29_31 40447 42597 + 4.C.1.1.16
TC HRGMv2_1815_29 HRGMv2_1815_29_32 42594 43784 + 2.A.1.42.1
Gene ID: HRGMv2_1815_29_23
Type: CAZyme
Location: 23083 - 25488 (+)
Gene ID: HRGMv2_1815_29_24
Type: TF
Location: 25519 - 26523 (-)
Gene ID: HRGMv2_1815_29_25
Type: TC
Location: 26716 - 28980 (+)
Gene ID: HRGMv2_1815_29_26
Type: pfam
Location: 29260 - 30987 (+)
Gene ID: HRGMv2_1815_29_27
Type: TC
Location: 31467 - 32678 (+)
Gene ID: HRGMv2_1815_29_28
Type: TC
Location: 32675 - 35875 (+)
Gene ID: HRGMv2_1815_29_29
Type: TC
Location: 35872 - 38973 (+)
Gene ID: HRGMv2_1815_29_30
Type: TC
Location: 38977 - 40365 (+)
Gene ID: HRGMv2_1815_29_31
Type: TC
Location: 40447 - 42597 (+)
Gene ID: HRGMv2_1815_29_32
Type: TC
Location: 42594 - 43784 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List