Cluster: HRGMv2_1815_CGC39
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1815
- CGC Family ID: CGCFAM_00293
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1815_12 | HRGMv2_1815_12_72 | 72718 | 73047 | - | 2.A.7.1.9 |
| TC | HRGMv2_1815_12 | HRGMv2_1815_12_73 | 73034 | 73384 | - | 2.A.7.1.9 |
| CAZyme | HRGMv2_1815_12 | HRGMv2_1815_12_74 | 73812 | 75494 | - | AA3_2 |
| sulfatase | HRGMv2_1815_12 | HRGMv2_1815_12_75 | 75519 | 76991 | - | S1_6 |
| STP | HRGMv2_1815_12 | HRGMv2_1815_12_76 | 77006 | 77599 | - | TetR_N |
| TC | HRGMv2_1815_12 | HRGMv2_1815_12_77 | 77857 | 79887 | + | 2.A.15.1.4 |
Gene ID: HRGMv2_1815_12_72
Type: TC
Location: 72718 - 73047 (-)
Type: TC
Location: 72718 - 73047 (-)
Gene ID: HRGMv2_1815_12_73
Type: TC
Location: 73034 - 73384 (-)
Type: TC
Location: 73034 - 73384 (-)
Gene ID: HRGMv2_1815_12_74
Type: CAZyme
Location: 73812 - 75494 (-)
Type: CAZyme
Location: 73812 - 75494 (-)
Gene ID: HRGMv2_1815_12_75
Type: sulfatase
Location: 75519 - 76991 (-)
Type: sulfatase
Location: 75519 - 76991 (-)
Gene ID: HRGMv2_1815_12_76
Type: STP
Location: 77006 - 77599 (-)
Type: STP
Location: 77006 - 77599 (-)
Gene ID: HRGMv2_1815_12_77
Type: TC
Location: 77857 - 79887 (+)
Type: TC
Location: 77857 - 79887 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Pantoea
Species
Pantoea brenneri
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.